Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17130 131 / 8e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G47960 63 / 2e-12 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT5G64620 50 / 8e-08 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT3G17140 44 / 4e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017074 [exp] 314 / 1e-110 AT3G17130 121 / 8e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10016319 [exp] 191 / 4e-62 AT3G17130 151 / 8e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10002739 [exp] 184 / 2e-59 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10003530 [exp] 77 / 1e-17 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002933 [exp] 74 / 1e-16 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 70 / 4e-15 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037792 [exp] 68 / 3e-14 AT1G47960 91 / 1e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017076 [exp] 67 / 7e-14 AT1G47960 88 / 9e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 66 / 1e-13 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102600 [exp] 159 / 6e-50 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.009G083500 [exp] 91 / 7e-23 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G063000 [exp] 74 / 2e-16 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.001G288500 [exp] 52 / 5e-09 AT1G47960 59 / 1e-11 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.007G108301 [exp] 51 / 5e-08 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.008G013400 [exp] 49 / 2e-07 AT5G64620 66 / 8e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.005G007100 [exp] 48 / 6e-07 AT1G09360 85 / 6e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G044100 [exp] 47 / 2e-06 AT5G46940 111 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086600 [exp] 42 / 7e-05 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.005G023050 [exp] 42 / 0.0001 AT5G46940 45 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10037791 pacid=23167156 polypeptide=Lus10037791 locus=Lus10037791.g ID=Lus10037791.BGIv1.0 annot-version=v1.0 ATGACAATCTCATTCCCTCGTACAATCCCTCTCCTATCACTAACAATTCTCTTCATCATCATTCCGACCGGCAGCGTCCAATCCGACGACGGTCAAAATC TAATCGACCAAGTATGCAAGAAGACCCCTTTCTACCGCCTCTGTTCCGACACTCTGCATTATTCCGCCGCCAATAACACCACCTCAAAAGACGTCAAGGG GATAGCTTCCGAGTTCACCCACGTCGTACTGTCGAACGCCACGGAGATGCTGGTTTACATCCAGGGACGGCTAAAGATCGCCGAGGATCCCAAGATGGAG AAAGCTCTGGCGAATTGTGCGGAGCTCTACATTCCGGTGGTGAAGTACAATCTCCCTCAGGGGATCGACGCTTTCCTCAGGGGTTACTATGGCTTCACCA GGTACGCGCTCTCCGACGCCGGAGATCAGGCCGACGCATGTGAGGGTAAATTCTCTGGCGGCGGAGGGGATGAGGTTAGTGCGAGGAGTAAGATGGTTAG TGAGTTGTGTGATGTTGCGGCGGCGATTGTCGGATTGTTGATCAAAGGCCGCAGGGGTTTCTTGAATAATGTTTGA
AA sequence Show only first row Show all	>Lus10037791 pacid=23167156 polypeptide=Lus10037791 locus=Lus10037791.g ID=Lus10037791.BGIv1.0 annot-version=v1.0 MTISFPRTIPLLSLTILFIIIPTGSVQSDDGQNLIDQVCKKTPFYRLCSDTLHYSAANNTTSKDVKGIASEFTHVVLSNATEMLVYIQGRLKIAEDPKME KALANCAELYIPVVKYNLPQGIDAFLRGYYGFTRYALSDAGDQADACEGKFSGGGGDEVSARSKMVSELCDVAAAIVGLLIKGRRGFLNNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17130			Plant invertase/pectin methyle...		Lus10037791 [exp]	0	1
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10015700 [exp]	6.9	0.8598
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10026769 [exp]	9.2	0.8132
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031824 [exp]	13.1	0.7963
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10008673 [exp]	16.8	0.8638
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	18.5	0.8163
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009623 [exp]	22.2	0.8439
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	27.5	0.7855
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	28.3	0.7718
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	28.8	0.8562
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	29.7	0.7971

Compare expression of checked genes

Lus10037791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.