Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17152 74 / 4e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17150 66 / 5e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17220 60 / 4e-11 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT1G47960 55 / 7e-09 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT5G64620 53 / 2e-08 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT3G17230 47 / 6e-06 invertase/pectin methylesterase inhibitor family protein (.1) AT3G17130 41 / 0.0003 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17225 40 / 0.0006 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017077 [exp] 266 / 7e-91 AT3G17152 76 / 1e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10017078 [exp] 88 / 6e-21 AT5G49525 57 / 3e-12 unknown protein Lus10016317 [exp] 71 / 1e-14 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 66 / 3e-13 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 64 / 2e-12 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 64 / 2e-12 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10003530 [exp] 59 / 3e-10 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002738 [exp] 59 / 3e-10 AT1G47960 67 / 5e-14 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002933 [exp] 56 / 2e-09 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G083500 [exp] 67 / 1e-13 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G209800 [exp] 67 / 2e-13 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.010G063000 [exp] 61 / 2e-11 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.007G068300 [exp] 52 / 3e-08 AT4G00872 113 / 4e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G127500 [exp] 49 / 4e-07 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G148300 [exp] 47 / 4e-07 AT5G49525 57 / 2e-12 unknown protein Potri.013G012766 [exp] 49 / 5e-07 ND / Potri.003G122000 [exp] 48 / 1e-06 AT5G64620 53 / 7e-09 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.013G012800 [exp] 47 / 2e-06 ND / Potri.002G191500 [exp] 47 / 2e-06 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10037793 pacid=23167354 polypeptide=Lus10037793 locus=Lus10037793.g ID=Lus10037793.BGIv1.0 annot-version=v1.0 ATGCACAAGATTTCCACCCTCCTCCTCTTCTTCATCCCTCTCTTCCTTCACCAAGCTACGGCCGATGTGGCGCTGCTCGAAAAGACCTGCAAGAGCAGCA CCAACTACAGACTCTGCATCTCATCCCTCCGATCGGATCCTCGAACCGCAAAGGCAGCCGATGTCAAAGGGCTGGCTTCGATCGAGTTGGACATCATCTC GGCTAAGGCCAATGTCGCGTTAGACCACGTTGCTAGTCTGTTTAGGAACGTGACTGACCCGTATTTGTACCGTGCGTACGGGACCTGTGTCGAGGAGTTT AGAGGAGCAGTCGAAGGTGCTAACTCCAGCCTCGCCGGTTCGATTTCTGGTTTGAAATCAGGGGATTATGCAGCGGCGAAGAGCGGGCTTGAGCGTACTA AGGCCCATGTAGCGATGTGTCTGGAAGGGTTGGCTGGCGATAAGGGGCCGTTTACTGATGAGGCCCAACTCAAACGAATTGGATTTGGATCACAGAGTGC ATCCACAGAAGATGAAGAAGTAGCAGAGCATCGTTACGAGAGCGACGGATTCAACCGCCGTCACCAAGCTCCACAGCACCTCGTCGATCGAGAACTCCAG CCACCGCAGGCTAGGCTGGCTCCACCGCCGCCACGAGAGGTCGATGCCAGGCCATCGGAAGCTAGATGTCGGCAGGGAGAGGTCGAGTTCCGGCCACCGG AAGTAGGATGGGTACCAGTACACCCACCACCGGCACATAATGAGGAATTTTGA
AA sequence Show only first row Show all	>Lus10037793 pacid=23167354 polypeptide=Lus10037793 locus=Lus10037793.g ID=Lus10037793.BGIv1.0 annot-version=v1.0 MHKISTLLLFFIPLFLHQATADVALLEKTCKSSTNYRLCISSLRSDPRTAKAADVKGLASIELDIISAKANVALDHVASLFRNVTDPYLYRAYGTCVEEF RGAVEGANSSLAGSISGLKSGDYAAAKSGLERTKAHVAMCLEGLAGDKGPFTDEAQLKRIGFGSQSASTEDEEVAEHRYESDGFNRRHQAPQHLVDRELQ PPQARLAPPPPREVDARPSEARCRQGEVEFRPPEVGWVPVHPPPAHNEEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17152			Plant invertase/pectin methyle...		Lus10037793 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	1.7	0.9622
AT5G22050			Protein kinase superfamily pro...		Lus10004110 [exp]	2.8	0.9384
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10022392 [exp]	4.2	0.9404
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	5.3	0.9569
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	7.7	0.9356
AT4G19420			Pectinacetylesterase family pr...		Lus10037269 [exp]	8.4	0.9336
AT5G67090			Subtilisin-like serine endopep...		Lus10024815 [exp]	9.5	0.9251
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	14.3	0.9252
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	16.0	0.8925
AT1G10800			unknown protein		Lus10037441 [exp]	17.9	0.9239

Compare expression of checked genes

Lus10037793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.