Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 405 / 4e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 379 / 4e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06650 377 / 3e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 373 / 1e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 367 / 3e-126 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 358 / 1e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30830 357 / 1e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 358 / 2e-122 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 355 / 1e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017080 [exp] 655 / 0 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 494 / 5e-176 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022197 [exp] 453 / 3e-160 AT1G06620 434 / 6e-153 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 447 / 1e-157 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 440 / 6e-155 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 437 / 7e-154 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 437 / 2e-153 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 433 / 3e-152 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 432 / 5e-152 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 419 / 1e-146 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 417 / 7e-146 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 414 / 6e-145 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 373 / 2e-128 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 361 / 5e-124 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 360 / 1e-123 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 331 / 5e-112 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 324 / 2e-109 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 313 / 7e-105 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 313 / 7e-105 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10037796 pacid=23167292 polypeptide=Lus10037796 locus=Lus10037796.g ID=Lus10037796.BGIv1.0 annot-version=v1.0 ATGGACTCTGCCACTGATCGACTCTCCCAGCTGAAAGCCTTCGACGAAACAAAAGCCGGCGTCAAAGGCCTTGCGGACGCCGGAATCAAACAACTCCCCG GATTCTTTCTCGCGCCGCCGCATTTCCTCGACAACGGAACCCACAGCGACGATCCAAACGACTTCGTTGTCCCAACCATTGACCTGCAGGGAGGAGGAGG CGGCGATCGGAAACAGGTTGTCGATAGAATCAGGGAGGCATCCGAGAAATGGGGATTCTTCCAAGTGGTGAACCATGGTATTGCGGAGAGCGTACTAGAG GAGATGAAAGCCGGAGTGCGGAGGTTCCACGAACAGGATTTGGAGATGAAGAAAGAGTTTTTTGGGAGGGATCCTACCAAGACTGTTGTTTACAACAGCA ATTACGATTTGTATACTACGCCCGTTGTCAACTGGAGGGATACCGTTCTGTTTCATATGGCTCCGGATGCTCCGAATCCTGACGAATTGCCCTCTTCGTG CAGGGAAATTGTGATGGAATACAGCAAGGAATTGCTGAAATTATCATATCTACTGTTCCAACTGTTATCAGAAGCTTTGGGTTTACCATCAGATTACTTG AAAGAAATGGATTGTGCAAAAGGGATATACATGGCGTGCCATTACCATCCACCTTGCCCTCAGCCAGAGCTTACGCTCGGAGCAACAAAGCATACCGACT TCGATTTCATCACGGTGCTGTTACAGGACCACATCGGAGGCCTTCAGGTTCTCCATCGAGGGCGGTGGGTGGATGTCCCGCCTTTGCAAGGAGGTCTAGT GGTCAACATCGGAGATTTGCTCCAGCTGATGACCAACGACAAGTTCGTAAGTGTGAACCATAGAGTGGTGAGTAAGAGTGTCGGACCGAGAATATCGATA GCGTCGTTTTTTAGCACCGGATTTGCTGTGAATGATAGGCTGTACGGACCGATAAAGGAGTTGGTATCGGCGGATGATCCTCCGAGATACAAGGAAACTA CGATTCAAGATTACACAAACCAGGCTTATAAGAAGGGATTGGATGGGACCTCTGCATTGTTGAATTTTAAGATCTGA
AA sequence Show only first row Show all	>Lus10037796 pacid=23167292 polypeptide=Lus10037796 locus=Lus10037796.g ID=Lus10037796.BGIv1.0 annot-version=v1.0 MDSATDRLSQLKAFDETKAGVKGLADAGIKQLPGFFLAPPHFLDNGTHSDDPNDFVVPTIDLQGGGGGDRKQVVDRIREASEKWGFFQVVNHGIAESVLE EMKAGVRRFHEQDLEMKKEFFGRDPTKTVVYNSNYDLYTTPVVNWRDTVLFHMAPDAPNPDELPSSCREIVMEYSKELLKLSYLLFQLLSEALGLPSDYL KEMDCAKGIYMACHYHPPCPQPELTLGATKHTDFDFITVLLQDHIGGLQVLHRGRWVDVPPLQGGLVVNIGDLLQLMTNDKFVSVNHRVVSKSVGPRISI ASFFSTGFAVNDRLYGPIKELVSADDPPRYKETTIQDYTNQAYKKGLDGTSALLNFKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10037796 [exp]	0	1
AT5G44410			FAD-binding Berberine family p...		Lus10042383 [exp]	2.4	0.6602
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10021448 [exp]	9.8	0.6657
AT2G43610			Chitinase family protein (.1)		Lus10003584 [exp]	10.3	0.6660
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	14.8	0.6443
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10027947 [exp]	20.4	0.6201
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013764 [exp]	22.3	0.5079
AT3G59500			Integral membrane HRF1 family ...		Lus10008752 [exp]	22.8	0.5847
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	25.7	0.5865
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010799 [exp]	27.4	0.5744
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Lus10002196 [exp]	31.3	0.5729

Compare expression of checked genes

Lus10037796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.