Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47980 406 / 4e-143 unknown protein AT3G62730 316 / 1e-107 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017081 [exp] 592 / 0 AT1G47980 405 / 1e-142 unknown protein Lus10015600 [exp] 67 / 2e-13 AT1G47980 56 / 2e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102000 [exp] 433 / 8e-154 AT1G47980 415 / 8e-147 unknown protein Potri.001G380000 [exp] 341 / 1e-117 AT3G62730 327 / 4e-112 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037797 pacid=23167300 polypeptide=Lus10037797 locus=Lus10037797.g ID=Lus10037797.BGIv1.0 annot-version=v1.0 ATGTCTGCCTCCCAAATTCTTCCCATGCCACTTCTCCTGCTTGTTGCCGCAGCCAGCTTGTTCCCGGTTCTTCCCGTCTCACATTCGTCTCGCGTGTTTC ACCGCGACAGTTACGCTCCGTCTACCATTGCCAGCAAGGTGCCTCCATCAGACGTCGATCTGGTCGAGTTCCCCTTGAATCTAGAGTACCTCGAGGCCGA ATTCTTCCTCTTTGGCGCTTTGGGGAACGGATTGGATGTTTATGCCCCTAACTTAACCATGGGTGGCCCTCCGCCTATCGGTGCCCACAAGGCTAATCTC GACCATCTCACCCGTGACATCATCGAACAGTTTGCATGGCAAGAGATCGGCCACTTGAGGGCGATAAAGAGCAAGGTGAAGGGATTTCCAAGGCCATTGT TGGATCTGAGCCCGGAATCTTTCGCAAAGGTCATCAACAGTGCATTTGGGAGGCCTTTGTTTCCTCCCTTTGACCCGTACTGCAATTCAATCAACTATCT CATAGCATCGTACCTTGTTCCTTACGTTGGGCTCACTGGCTACGTTGGTGCTAACCCAAAACTCCAAGGCCCGTCTTCTAGAAAGCTTGTAGCGGGGCTT TTGGCGGTGGAAGCGGGGCAAGACGCGGTAATAAGGTCGATGTTGTACGAGAGGTCGCTAATGAAGGTGCATCCGTACGACATCACAGTGGCTGAATTCA CAAACAAGATCTCCATTCTGAGGAACAAGCTGGGAAACGACGGGATCAAAGACGAAGGTTTGATGGTTCCGAGCGAATTAGGGGCGGAAGGTAAAGTGAG AGGGAATGTGTTGGCCGGTAACGAATTCTCACTAGGCTACGGGAGAACTCCTGAAGAGATCTTGAGGATCGTGTATGGCAACGGCAACGAATCTTCTCCT GGTGGATTTTACCCAAATGGTGCTCGTGGCGTCATCGCCATGTCCCACTTGGGGAAAAGCTCCATCTAA
AA sequence Show only first row Show all	>Lus10037797 pacid=23167300 polypeptide=Lus10037797 locus=Lus10037797.g ID=Lus10037797.BGIv1.0 annot-version=v1.0 MSASQILPMPLLLLVAAASLFPVLPVSHSSRVFHRDSYAPSTIASKVPPSDVDLVEFPLNLEYLEAEFFLFGALGNGLDVYAPNLTMGGPPPIGAHKANL DHLTRDIIEQFAWQEIGHLRAIKSKVKGFPRPLLDLSPESFAKVINSAFGRPLFPPFDPYCNSINYLIASYLVPYVGLTGYVGANPKLQGPSSRKLVAGL LAVEAGQDAVIRSMLYERSLMKVHPYDITVAEFTNKISILRNKLGNDGIKDEGLMVPSELGAEGKVRGNVLAGNEFSLGYGRTPEEILRIVYGNGNESSP GGFYPNGARGVIAMSHLGKSSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47980			unknown protein		Lus10037797 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	6.0	0.8478
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	6.5	0.8905
					Lus10002087 [exp]	6.6	0.8987
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	9.2	0.8636
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	12.8	0.8611
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	15.0	0.8874
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	17.2	0.8623
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016669 [exp]	18.0	0.8483
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	20.9	0.8707
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	23.5	0.8714

Compare expression of checked genes

Lus10037797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.