Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13770 125 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 105 / 3e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 101 / 1e-25 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G22690 101 / 1e-25 unknown protein AT3G02010 101 / 2e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 100 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 100 / 3e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 100 / 5e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18520 99 / 9e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33760 99 / 1e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017082 [exp] 281 / 3e-90 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10040504 [exp] 118 / 2e-31 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 117 / 5e-31 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 113 / 1e-29 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 104 / 1e-26 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009437 [exp] 104 / 1e-26 AT1G71420 753 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021232 [exp] 103 / 2e-26 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029482 [exp] 102 / 8e-26 AT4G18520 624 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 102 / 8e-26 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067500 [exp] 201 / 9e-61 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 124 / 9e-34 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G161800 [exp] 107 / 1e-27 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 106 / 2e-27 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 104 / 1e-26 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 103 / 2e-26 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 102 / 4e-26 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G006800 [exp] 101 / 1e-25 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 100 / 4e-25 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 100 / 5e-25 AT3G22690 1050 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037798 pacid=23166992 polypeptide=Lus10037798 locus=Lus10037798.g ID=Lus10037798.BGIv1.0 annot-version=v1.0 ATGCTTCGACAATGCACTTCCAAACTGGCCCTAAACGACGGGAGGGCGGTTCATGGGAATCTCATAAGGAGTGGGGTTGTGCCTGATTCACATTTATGGG TTTCTTTAACTAATTTCTATGCCAAGTGTGATTGTCTCCACATAGCACGCCAAGTGCTCGATGAAACGCCTGAACGTGGTGTTGTGTCGTGGACGGCTTT AGTTTCTGGGTTTGTCAGTAAAGGGTGCGGAGACGATGCTGCTAATCTATATTGCGTGATGAGGAGTGAAGACGTGAGGCCCAATGAGTATCTATTGGCT ACTATATTGAAAGCTTGCTCTCTATGCTTGGACGTGGAGCTTGGGAAGCAAGTACACGCCGATGCAGTAAAGGTTGGCTTGTTAAGGGACTTGTTTGTTG CCTCTGGTCTTGTGGATTTTTATGCTAAATGCAATTAA
AA sequence Show only first row Show all	>Lus10037798 pacid=23166992 polypeptide=Lus10037798 locus=Lus10037798.g ID=Lus10037798.BGIv1.0 annot-version=v1.0 MLRQCTSKLALNDGRAVHGNLIRSGVVPDSHLWVSLTNFYAKCDCLHIARQVLDETPERGVVSWTALVSGFVSKGCGDDAANLYCVMRSEDVRPNEYLLA TILKACSLCLDVELGKQVHADAVKVGLLRDLFVASGLVDFYAKCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10037798 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10037799 [exp]	8.8	0.8191
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Lus10002552 [exp]	10.7	0.8475
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	11.5	0.8443
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10012873 [exp]	13.3	0.8397
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	21.0	0.8325
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10000051 [exp]	27.7	0.8088
AT5G40520			unknown protein		Lus10027029 [exp]	31.7	0.8221
AT1G64600			methyltransferases;copper ion ...		Lus10017311 [exp]	40.6	0.7061
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	42.4	0.8077
AT4G30150			unknown protein		Lus10007572 [exp]	53.6	0.8151

Compare expression of checked genes

Lus10037798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.