Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68930 473 / 1e-157 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G27610 451 / 1e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 448 / 6e-147 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 448 / 2e-146 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 447 / 2e-146 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 445 / 1e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 450 / 3e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 442 / 7e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 430 / 4e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 427 / 6e-140 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017082 [exp] 1258 / 0 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013991 [exp] 494 / 4e-163 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 490 / 1e-161 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 478 / 6e-154 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004892 [exp] 464 / 2e-152 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 473 / 8e-152 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 463 / 4e-150 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 449 / 2e-147 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 444 / 1e-145 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067500 [exp] 939 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 498 / 7e-165 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 482 / 3e-161 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 481 / 5e-160 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 481 / 4e-159 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 477 / 3e-158 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 470 / 5e-155 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 462 / 2e-152 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 452 / 5e-149 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G044700 [exp] 451 / 3e-148 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037799 pacid=23167129 polypeptide=Lus10037799 locus=Lus10037799.g ID=Lus10037799.BGIv1.0 annot-version=v1.0 ATGTCTGAGAGGAACGCGATTTTATGGAACGTTTTGCTCAATGCTTATGCTGAAATTGGTGATGGGAAAGCCGTTTTGAAGTTGTTTTCCCATATAATGG AGTGGGATAACAAGTTAAACAAGTTTACTTTGTCAATTGTCTTAAAGGGGTGCGCGAATTCCGGAAATTTGAAAGAAGGTAAGGTTTTGCATTCTATAGT AATCAAAACTGGGTACGTACTTGCTGAATTTGTGACCTCCAGTTTGGTTGATATGTATTCAAAGTGTGGAATGGAAAGTGATGCATTACAAGTCTTTAAC GGGATAGAAGATCCTGATGTTGTGGCCTGGAGTGCAATAATTTCGTGTTTAGATCAGCATATTTCTAACCACGATGCAGCTGAGCTATACAAGAAGATGT TACTTGCAGGAGTCAAACCGAATCAATATATCTTCAGTAGCCTTGTTAGCACTGCTACCAGTATGGGGAATCTGCATTTTTGTAAAGGAATTCATGCTTG TATATCCAAGTGGGGTTTGGAGAATGATGCGTTAGTTAGCAATGCTTCGGTCATGATGTATATGAAACATGGAATTTTGGAAGATGGGCCATCAATTTTC CACCAGATACTTCTAGAAGGTTTGAAACCCAACATGCATACTTTCGTAGACACCTTAAGGTCATGCTCTAGTCTCTCTGATGTGTGCTTCAGCAAGCAAG TGCATGCTCACGTCATAAAGAGCTGCAACGATGGCAATGATTTTGTCGGAACAGCTCTTATTGATATGTATGCAAAAGGCAAATGTCTAGAAGATGCAGT AGCAGCTTTCAACAGATTGGTTAATCGGGATGTTTTCACTTGGACGGTCTTAATTGATGGTTATTCAAAAACAAATCAACCAGAAAAGGCTTTGAAATGT TTTGTAGAGATGCAAAGAGAAGGTGTGGACCCGAATGAGTTCACTGTTGCTAGCTGTTTAAATGGGTGTTCCCATTTGACAGCCCTGGAAGGTGGGCAGC AGGTGCATTCTATGGTTATGAAAGCTGGTCATACGGGCGACATTATTGTGGCTACTGCACTTGTTGATATGTATGGAAAGTGTGGCTGCATGGAAGATGC CAAGTCAATTTTTATGGGTATGGTTGTGCGAGATTCAGTCTCGTGGAATGCAATAATTGCAGTCTATTCATGGCATTGTCAAGGAATGAATGCTCTTGAC GCCTATAGAATGATGCTCGAGGAAGGATTTCTACCTGATGATGTGACTTTCTTGAGCATTCTGTCTGTATGCAGCAACATGGGTCTAGTTGAAGAGGGGG AAAAGCAATTTGAGTCCATGAGCAAAGTTTATGGAATTACTCCTTCACTTGAGCATTTTGCTTGCATGGTCAATATTCTTGCTCGGGCTGGCCAGTTTAA GGAGGTTGAAGTCTTCATTAAGGAACATAAGTTGATTACACATGCCTTGATATGGGAGACTGTACTTGGAGCTTGTAAAAATCATGCAAATGTTAAGCTT GGTGAAACTGCAGCTAAGAAACTCTTTGAACTTCAACCAAAGGTGGACTCTTCTCATATATCTCTGTCAAATATTTATGCTGCTAAAGGTATGTGGGTTG ATGTCCAGGAAATAAGGAGATTGATGTCTGCTGAGGGTGTTAAGAAGGGAACTGGCTGTAGCTGGGTGGGAATTGATGGTAAAGTACATGTCTTTGTTTC TCAAGATGGTTCTCATCCCAAGACAGACCAAATCTATGCTAAGTTGGAGAATTTGAAACAAAGGCTATCTTCAGTTGGTTATATCCCAAAAATAGAGAAT GTGCTTCATAATCTCGGCAATAGAGAGAAAATGGAACATCTCTGGCATCACAGTGAGAGACTAGCTCTGTCTTTGGCCCTGATAAGCACCGCTCCTGAGA AGCCGATACGTATTTTCAAGAATCTACGGATATGTGAGGACTGCCATGAGGTTATGAAGAGTATATCAGATATTACAGATCGAGAAATAGTTATGAGGGA CGTCAAACGCTTCCATCATTTTAAGATGGGGACTTGCTCTTGCCAAGACAATTGGTGA
AA sequence Show only first row Show all	>Lus10037799 pacid=23167129 polypeptide=Lus10037799 locus=Lus10037799.g ID=Lus10037799.BGIv1.0 annot-version=v1.0 MSERNAILWNVLLNAYAEIGDGKAVLKLFSHIMEWDNKLNKFTLSIVLKGCANSGNLKEGKVLHSIVIKTGYVLAEFVTSSLVDMYSKCGMESDALQVFN GIEDPDVVAWSAIISCLDQHISNHDAAELYKKMLLAGVKPNQYIFSSLVSTATSMGNLHFCKGIHACISKWGLENDALVSNASVMMYMKHGILEDGPSIF HQILLEGLKPNMHTFVDTLRSCSSLSDVCFSKQVHAHVIKSCNDGNDFVGTALIDMYAKGKCLEDAVAAFNRLVNRDVFTWTVLIDGYSKTNQPEKALKC FVEMQREGVDPNEFTVASCLNGCSHLTALEGGQQVHSMVMKAGHTGDIIVATALVDMYGKCGCMEDAKSIFMGMVVRDSVSWNAIIAVYSWHCQGMNALD AYRMMLEEGFLPDDVTFLSILSVCSNMGLVEEGEKQFESMSKVYGITPSLEHFACMVNILARAGQFKEVEVFIKEHKLITHALIWETVLGACKNHANVKL GETAAKKLFELQPKVDSSHISLSNIYAAKGMWVDVQEIRRLMSAEGVKKGTGCSWVGIDGKVHVFVSQDGSHPKTDQIYAKLENLKQRLSSVGYIPKIEN VLHNLGNREKMEHLWHHSERLALSLALISTAPEKPIRIFKNLRICEDCHEVMKSISDITDREIVMRDVKRFHHFKMGTCSCQDNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10037799 [exp]	0	1
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	1.7	0.8776
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	4.2	0.8596
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10000051 [exp]	6.2	0.8464
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10004081 [exp]	7.7	0.7840
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	8.1	0.7973
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10037798 [exp]	8.8	0.8191
AT3G04160			unknown protein		Lus10021982 [exp]	14.3	0.8320
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10006483 [exp]	15.7	0.8087
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	17.0	0.8415
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	25.3	0.8248

Compare expression of checked genes

Lus10037799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.