Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017083 [exp] 37 / 0.0004 ND 35 / 0.010
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037800 pacid=23167098 polypeptide=Lus10037800 locus=Lus10037800.g ID=Lus10037800.BGIv1.0 annot-version=v1.0 ATGAAGAGGATCATACTAAGCGCGCGGCCAAACAATACTGGTGCCTTCGCGAAGCCTGAACTCCTCAAAGCAAGCAGTCCGCCACCTGAAAAAATAGGTG CACGGTTGTTGATGCTCAGCAGTTTCAAGAATCTGCAAGTGGCCGTGTCAAACTGTAAACCTGATTGGTTTTTGGCCGAGCATGGTAAACACTGTTTCCT ATCTCAACAGACTAACTTTCTGATATCCGCCCCGGCTTCTGGTTCACCGAATTGTAGCCATGGAGTTGAGTTGCGATGA
AA sequence Show only first row Show all	>Lus10037800 pacid=23167098 polypeptide=Lus10037800 locus=Lus10037800.g ID=Lus10037800.BGIv1.0 annot-version=v1.0 MKRIILSARPNNTGAFAKPELLKASSPPPEKIGARLLMLSSFKNLQVAVSNCKPDWFLAEHGKHCFLSQQTNFLISAPASGSPNCSHGVELR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037800 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001952 [exp]	1.0	0.7665
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10014199 [exp]	4.7	0.6691
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	6.0	0.7476
					Lus10018751 [exp]	11.7	0.7026
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	16.1	0.6912
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014044 [exp]	21.5	0.7283
AT3G09430			unknown protein		Lus10000245 [exp]	25.2	0.6898
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	29.0	0.6410
					Lus10000761 [exp]	36.3	0.5868
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	36.9	0.6676

Compare expression of checked genes

Lus10037800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.