Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49580 535 / 6e-179 Chaperone DnaJ-domain superfamily protein (.1) AT1G16680 258 / 1e-75 Chaperone DnaJ-domain superfamily protein (.1) AT3G17170 236 / 2e-70 RFC3 REGULATOR OF FATTY-ACID COMPOSITION 3, Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT1G79030 241 / 3e-69 Chaperone DnaJ-domain superfamily protein (.1) AT4G28480 57 / 2e-08 DNAJ heat shock family protein (.1.2) AT2G20560 56 / 5e-08 DNAJ heat shock family protein (.1) AT3G17830 56 / 1e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G01390 54 / 1e-07 DNAJ heat shock family protein (.1.2.3.4) AT3G08910 54 / 2e-07 DNAJ heat shock family protein (.1) AT1G10350 54 / 2e-07 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017085 [exp] 1106 / 0 AT5G49580 670 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10017084 [exp] 331 / 1e-105 AT3G17170 268 / 8e-89 REGULATOR OF FATTY-ACID COMPOSITION 3, Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10032666 [exp] 275 / 1e-81 AT1G79030 772 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10043089 [exp] 132 / 3e-33 AT1G79030 398 / 6e-136 Chaperone DnaJ-domain superfamily protein (.1) Lus10017980 [exp] 61 / 3e-09 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 60 / 3e-09 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 60 / 3e-09 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 60 / 4e-09 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10037502 [exp] 59 / 8e-09 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148900 [exp] 654 / 0 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G101800 [exp] 295 / 4e-91 AT5G49580 355 / 1e-116 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G438300 [exp] 275 / 1e-81 AT1G79030 783 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G142000 [exp] 262 / 4e-77 AT1G79030 749 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G101900 [exp] 254 / 5e-77 AT3G17170 265 / 2e-87 REGULATOR OF FATTY-ACID COMPOSITION 3, Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.018G034600 [exp] 56 / 6e-08 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.010G036200 [exp] 54 / 2e-07 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.007G136700 [exp] 54 / 2e-07 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 54 / 2e-07 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 54 / 3e-07 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01250 [flax] [poplar] Ribosomal_S6 Ribosomal protein S6 CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10037801 pacid=23167338 polypeptide=Lus10037801 locus=Lus10037801.g ID=Lus10037801.BGIv1.0 annot-version=v1.0 ATGGCTCGCAAAGGGAGCCAACAGAAGAATGGAATGCCTAATCATAAGAAAAAGACTCCAGACTCGGAGGTGAAAGTGCAAGGTAAAGCTAGTCAAGCGA AGGTTTTTCCTGGAGAGGGTCTCCTGAATGGTGATCAGCCAGCTATTCCTAGTACGGATGCTGTAAAAACAACACATGTTGGAGATGAGAACAGGAAGCA ACAGAAGTCTGGGAAGTCTCAAAAGAAAGAGAAGCAAGGAGCAAATGGAGGTCATGAAGTAGAGGAATCAGTTACCCGTGGTGTTAGTTTGAACAATCCC ATCAATGCTTCTGCAGAAAGTACTAGGTTGAGAGAAGAACATGAGGGAACTGGCACAGCAAATGGTCCAACAAACTGGGCAGATATACCTGGAGACTTGA TCAATCGCTTTCACCTTAAAAATTTTATGGATAATGTTGACTTTTCTGGAAACATGGCTGCCAGAAACCTGAGAGCATCAACTTTGTATTTGTCGAAGGC AGTAGGTGAGTGGATTGAAAAGCAGAGGCCATTGCTTATTGGCCTTGCCACCAACCTAGCTGATGTCCGTGATTATGCTAGACAGAAGTTTGACGTAGCT TATCCCGTTGTATTGAAATGGCTTTCGCATCTTGGGAATATTGTAATCCTTTTATCAGTGGTTTGGTTGGACTGCACTGCAAGAGGGATTGATTCCTTTC TACGGATGGGGACAACATCATTTTTCTCAGTTATATGGTGCAGCATTCTGTCTATTATTGCCATGGCCGGCATATCCAAGTTTCTAATTGTCATGGGGTT AGCTGCAGCTGTGGGACTTTTCATAGGGTTTACCCTTGGGCTATTGATTGTTGCCATTTCTGCTACTGCTTTCCTATGGTGTTATGGAAGCTTTTGGACT ACAGTTTGCATTACTGCAATTTCTGGTTTAACATTCTTATCAAGCCATGAAAGTCTTGCTTTACTAATCGCCACTACTTACTCAGTATACTGTGCATGGG GATATGTCGGATGGCTTGGTTTACCTCTGGCGTTGAATTTGGCTTTTATCTCGAGTGACATTTTGATTTACTTTTTAAAGAATAACATTCACCGGCATAG AAGGTCTGATGGATCTTTTGAGAATTCAGCAGGACCCCAAGATATTCCAAACTTCTCTAATAGTGAATCTTTCCAACCTGGATTCACTGAGTCTGTGCCT GGTGCATCAGAAGACCGCAGCCCTGGTGTGGCTTCAACCAGTGGGACAGATTCGGAGTTAAGTTCTGAAGACGAGGTTATCCGGTTGCTGAACTGCACTG ATCACTACTCCGTGTTGGGATTGTCTCGCTATGAAAACGTGGACATTGCTTTACTGAAGAAAGAATATAGGAAAAAGGCAATGCTGGTTCATCCTGATAA GAACATGGGAAATGATAAGGCAGCAGAAGCCTTTAAAAAACTTCAAAACGCGTATGAGGTACTACTTGAATCCTCAAAACAAAAGGCCTATGATGATGAA TTGCGGAGGGAAGAATTGATAAACTATTTCCGAAGGTTTCATAGTAATTCTCAAAAGGAATGCAAAGATTTTCATCCAGCAAAAGATGGAGATGGGTGGG TTGAGCAATCTGCACAACCTTTGTTATTCGGATTACTCCAGAAGGTGGAAGCCCCTTTTGCATATGTTTGCGCAGACAGCAAGATATACAATGCTACGGA CTGGTATAATTGCCAGGGAATGAGATGTCCAGCAAACACCCACAAACCTAGTTTCCATGTGAATACTAGCCTAACATCTAAACATACCAGCACCACCAAG GGCTCCACAAGTTCAGGACAAAAGAACAGCCGGATGCCGCCTCCACCAGCTAACATGGAAGAAACAATGACGGAGGAAGAGTTCTTCGAATGGTTTCAGA ACGCGATGCAGTCAGGAGCGTTTGACAACGTTGGCGGTAGAGGAGCATCAGCTGCAGAGACCCCTTCGTCTTCCAAGGCAGCCGGAAATGGTGTGAAGAG CGGGGGCAGTGGTAATAGTAGTAAGAAGAAGAAAAGGGGGAAGAAGTGGTCTCAGGGTAGTGAGATACCTTTGTTTCTGGGAGTTGGATATGGCCTAACC AGCCTCTTCCTTATACATCTTAAGAAGGTGCAGGAAGATGGTAGTGTCCTCCCCGAATTCGCTGACGCTGAAGAAGAAAAGCTGTACGATTTTCTGAACC TGGAGCTTCAAAGTGGTTTGGATGTGGACCGGATGCGGCATTACGAAGTGGTTTATCTAATCCACGAGATGTATGAGGAGGAAGTTGACAAAGTGAACGA GAAGGTTCAAGATTTTTTGAGGGAGAAGAAAGGCAAGGTGTGGAGGATGAACGACTGGGGGATGAGAAGGCTAGCGTACAGGATCCAGAAAGCCTGGAAT GCTCACTACATTCTGATGAATTTCGAGATGGAAGCCAAGTGGATCAACGAGTTCAAGACTCTGCTAGACAAGGACGAGAGGGTTATCCGACACCTTGTCA TCAAACGAGATAAAGCCATCACTCAGGATGACCCTCCTCCGCTAGAGTTCCATACTCTCAAACAGGACGCTTCAGATGAAGATGATGACGAGGAGGAGGA TGAGGAGGGTGAGTATGATGATGATGATGATGATGAAGAGTTCGATGATGATGAGGATTGGGACGAAGAGGATGATGATGACGATGAGGAGGAGGAGGAG GGTGATGATGAAGAGGCTGAAGATGGCGTTGTGATTGTGAACATTGACGATGATGAGGGGGAAGGAAGTGGTAATGGGAAGAAGATGAAGAGTGCGAATT CGATTGCTGAATCGAAAGGAAGAAATGAGGTGGCTGATAAAGTAAGAAGGTAG
AA sequence Show only first row Show all	>Lus10037801 pacid=23167338 polypeptide=Lus10037801 locus=Lus10037801.g ID=Lus10037801.BGIv1.0 annot-version=v1.0 MARKGSQQKNGMPNHKKKTPDSEVKVQGKASQAKVFPGEGLLNGDQPAIPSTDAVKTTHVGDENRKQQKSGKSQKKEKQGANGGHEVEESVTRGVSLNNP INASAESTRLREEHEGTGTANGPTNWADIPGDLINRFHLKNFMDNVDFSGNMAARNLRASTLYLSKAVGEWIEKQRPLLIGLATNLADVRDYARQKFDVA YPVVLKWLSHLGNIVILLSVVWLDCTARGIDSFLRMGTTSFFSVIWCSILSIIAMAGISKFLIVMGLAAAVGLFIGFTLGLLIVAISATAFLWCYGSFWT TVCITAISGLTFLSSHESLALLIATTYSVYCAWGYVGWLGLPLALNLAFISSDILIYFLKNNIHRHRRSDGSFENSAGPQDIPNFSNSESFQPGFTESVP GASEDRSPGVASTSGTDSELSSEDEVIRLLNCTDHYSVLGLSRYENVDIALLKKEYRKKAMLVHPDKNMGNDKAAEAFKKLQNAYEVLLESSKQKAYDDE LRREELINYFRRFHSNSQKECKDFHPAKDGDGWVEQSAQPLLFGLLQKVEAPFAYVCADSKIYNATDWYNCQGMRCPANTHKPSFHVNTSLTSKHTSTTK GSTSSGQKNSRMPPPPANMEETMTEEEFFEWFQNAMQSGAFDNVGGRGASAAETPSSSKAAGNGVKSGGSGNSSKKKKRGKKWSQGSEIPLFLGVGYGLT SLFLIHLKKVQEDGSVLPEFADAEEEKLYDFLNLELQSGLDVDRMRHYEVVYLIHEMYEEEVDKVNEKVQDFLREKKGKVWRMNDWGMRRLAYRIQKAWN AHYILMNFEMEAKWINEFKTLLDKDERVIRHLVIKRDKAITQDDPPPLEFHTLKQDASDEDDDEEEDEEGEYDDDDDDEEFDDDEDWDEEDDDDDEEEEE GDDEEAEDGVVIVNIDDDEGEGSGNGKKMKSANSIAESKGRNEVADKVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	0	1
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	1.7	0.9159
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	2.4	0.8885
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	4.0	0.8682
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	6.3	0.8619
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	6.3	0.8776
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10032522 [exp]	7.3	0.8761
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	8.6	0.8895
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	11.0	0.8592
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	13.3	0.8846
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	14.3	0.8592

Compare expression of checked genes

Lus10037801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.