Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 497 / 1e-177 F-box family protein (.1) AT2G02030 87 / 8e-19 F-box family protein (.1) AT1G33530 82 / 6e-17 F-box family protein (.1) AT1G12870 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) AT1G12855 74 / 3e-14 F-box family protein (.1) AT5G07610 72 / 8e-14 F-box family protein (.1) AT1G71320 71 / 2e-13 F-box family protein (.1) AT2G43260 71 / 2e-13 F-box and associated interaction domains-containing protein (.1) AT1G19160 71 / 3e-13 F-box family protein (.1) AT2G43445 70 / 5e-13 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017086 [exp] 708 / 0 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10010910 [exp] 76 / 8e-15 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10018106 [exp] 69 / 8e-13 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10015048 [exp] 69 / 1e-12 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10024021 [exp] 66 / 2e-11 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10013872 [exp] 65 / 2e-11 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10041733 [exp] 62 / 2e-10 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10031512 [exp] 62 / 3e-10 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10038603 [exp] 61 / 5e-10 AT3G06240 110 / 2e-26 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149000 [exp] 569 / 0 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.008G038000 [exp] 107 / 3e-26 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G224400 [exp] 107 / 1e-25 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.008G214000 [exp] 93 / 7e-21 AT1G64295 140 / 3e-38 F-box associated ubiquitination effector family protein (.1) Potri.016G012700 [exp] 92 / 2e-20 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G066400 [exp] 90 / 5e-20 AT1G64295 125 / 9e-33 F-box associated ubiquitination effector family protein (.1) Potri.010G154500 [exp] 91 / 8e-20 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.014G162600 [exp] 88 / 5e-19 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 87 / 1e-18 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.010G254000 [exp] 86 / 2e-18 AT5G07610 149 / 1e-40 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10037802 pacid=23167277 polypeptide=Lus10037802 locus=Lus10037802.g ID=Lus10037802.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAATTCTTCCCGGACGAAGTCATCCTCCAAATCCTATCTCGACTCCCCGTGAAATCATTGTTCCAAGCCAGAGCGGTTTCCAGAAGGTGGT ACTCGCTATCCACAGATAAGTATTTCGTCCAACTCTACAACAGATTAGCCGTCGAGAATTCCAAAGTTCTGGTAGACGTCACGGATCCTTCCGAATCGAA ATCCAAGTCCAGCCTAATATGTGTCGATAACCTAGCCGGCGTATCCGAACTCTCCCTTGATTTCCTGGGCGATCGCGTCAAAATCAGAGCCTCCTGTAAC GGCTTGCTTTGTTGCTCTTGCGTTCCCGATAAAGGTTTGTATTACGTCTGCAATCCTGTGACTAGGCAGGTTAGGATGCTTCCCAGAACTAGAGAAAGAC AGGTTACTAGGTTTTACCCCGATAGCGATCCGACATTGGTTGGTTTGGGATGTGATTTATCGTCGCAGAAGTTCAATGTGGTACTGGCATTCTTTCACCG GACGTTCGGCCATAGACCGGACGGGACGTTTGTGTGCTTCGTGTTCTATTCTGAGACGAATCGATGGAGGAAGTTTGTGTCAATCCAGGACGATCATTTC ACTCACATGAACAGGAATCAGGTCGTGTTTGTGAACGGTTCGCTGCATTGGTTGACCGGCAGCTGCTCGTTCGTCCTTGCGCTTGATGTCGAATGTGAAG TGTGGAGGAAGATTTCGTTGCCGGACGAGGTGAGTTATGGGGTTGGGAACAGGGTTTATCTGCTCGAATTGGGCGGGTGTTTGTCTGTGGTCCAGATTTC GGAGGCTTGGATGAAGATATGGGCGATGAAGAATTACGAGAGCGAAGTGTGGAGTGTTGTGGATAGAGTGAGCTTGAGGTGTATTAGAGGGATGGTTCCG GGGATCTTTCCGATTAGCCAGACGAGCGAGTTTGTGTTCATGGCAAGTCATAAGCAGGTGCTGGTTTACAATAGGAAGAGTAGGGTGTGGAAAGAGATGT ATTCTTTGCAAACCAGTAGCTCTCCATTCCCGCTGTGGTTCTCGGCCCATGCTTTTCGAAGTACCATCTTCCCTTGCAACTGA
AA sequence Show only first row Show all	>Lus10037802 pacid=23167277 polypeptide=Lus10037802 locus=Lus10037802.g ID=Lus10037802.BGIv1.0 annot-version=v1.0 MAEEFFPDEVILQILSRLPVKSLFQARAVSRRWYSLSTDKYFVQLYNRLAVENSKVLVDVTDPSESKSKSSLICVDNLAGVSELSLDFLGDRVKIRASCN GLLCCSCVPDKGLYYVCNPVTRQVRMLPRTRERQVTRFYPDSDPTLVGLGCDLSSQKFNVVLAFFHRTFGHRPDGTFVCFVFYSETNRWRKFVSIQDDHF THMNRNQVVFVNGSLHWLTGSCSFVLALDVECEVWRKISLPDEVSYGVGNRVYLLELGGCLSVVQISEAWMKIWAMKNYESEVWSVVDRVSLRCIRGMVP GIFPISQTSEFVFMASHKQVLVYNRKSRVWKEMYSLQTSSSPFPLWFSAHAFRSTIFPCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49610			F-box family protein (.1)		Lus10037802 [exp]	0	1
AT5G49610			F-box family protein (.1)		Lus10017086 [exp]	2.4	0.8594
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	2.6	0.8791
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	3.0	0.8445
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	6.6	0.8143
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10028319 [exp]	12.2	0.7999
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	15.2	0.8105
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	15.4	0.7977
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	15.5	0.7718
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	16.1	0.7683
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	19.6	0.7954

Compare expression of checked genes

Lus10037802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.