Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49600 145 / 2e-44 Protein of unknown function, DUF538 (.1) AT5G46230 104 / 5e-29 Protein of unknown function, DUF538 (.1) AT1G56580 105 / 7e-29 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT1G09310 104 / 1e-28 Protein of unknown function, DUF538 (.1) AT4G24130 89 / 2e-22 Protein of unknown function, DUF538 (.1) AT1G30020 79 / 1e-18 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017087 [exp] 362 / 1e-128 AT5G49600 145 / 3e-43 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 114 / 3e-32 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10039866 [exp] 112 / 2e-31 AT1G09310 196 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 107 / 1e-29 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 105 / 3e-29 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 105 / 4e-29 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 99 / 2e-26 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 85 / 4e-21 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 78 / 2e-18 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149100 [exp] 140 / 1e-42 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 114 / 2e-32 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 111 / 3e-31 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 103 / 2e-28 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 103 / 3e-28 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 102 / 8e-28 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 70 / 2e-15 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 66 / 7e-14 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 62 / 8e-13 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10037804 pacid=23167010 polypeptide=Lus10037804 locus=Lus10037804.g ID=Lus10037804.BGIv1.0 annot-version=v1.0 ATGTTCGACGTATCCTCAACCATCGCTCAGACAAGCTTCGCCATCCAAGAGATGAAGACCACCAACTCCGCCGAGGTCCACCACGGCGACGACAACTGCA GGGCCAAGTTCAGGCAGCTCCTCTCCGGCGTCGGCCTCCCCGCCGAGCTCCTCGTCGTCGAGGACATCCAGGAATGCGGCTACGTCGAGAAAACAGGGTT CGTCTGGCTCAAGCTTAACAAGACCAAGAAGAACCACTACAAGTTCGACAACGTCAGCCTCTGCTACGACGACGTCATCACCGCCTCCTTGGAGAGGAAC AGGATCAAGAATCTGACCGGGGTCAAGGCCAAGGAGTTCCTGGTCTGGATTGCGTTGAGTGAAATCCACGTAACCGATGCCGCCGGCAAGAGAAACGCCA TAGCCGCCTTCGGTGGGAGGAGGAGTTCTTCTTCAACTATCACGTTCAAGACTCCGGTGGGGCTTTCCAAGTCGTTTCCTTTGTCGTTGTTCGTGGGTGG TGATGAAGTTGCAACGAAATCGGGAATACAACTGGCGTTGTAG
AA sequence Show only first row Show all	>Lus10037804 pacid=23167010 polypeptide=Lus10037804 locus=Lus10037804.g ID=Lus10037804.BGIv1.0 annot-version=v1.0 MFDVSSTIAQTSFAIQEMKTTNSAEVHHGDDNCRAKFRQLLSGVGLPAELLVVEDIQECGYVEKTGFVWLKLNKTKKNHYKFDNVSLCYDDVITASLERN RIKNLTGVKAKEFLVWIALSEIHVTDAAGKRNAIAAFGGRRSSSSTITFKTPVGLSKSFPLSLFVGGDEVATKSGIQLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49600			Protein of unknown function, D...		Lus10037804 [exp]	0	1
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	2.2	0.8859
AT1G23110			unknown protein		Lus10007928 [exp]	3.9	0.8600
AT1G23110			unknown protein		Lus10013464 [exp]	4.2	0.8268
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	4.9	0.8685
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	7.5	0.8460
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	11.8	0.8276
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023525 [exp]	13.4	0.8061
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	22.8	0.8053
					Lus10042963 [exp]	30.0	0.8247
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025322 [exp]	31.9	0.8163

Compare expression of checked genes

Lus10037804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.