Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06520 248 / 4e-77 agenet domain-containing protein (.1) AT1G09320 221 / 2e-66 agenet domain-containing protein (.1) AT1G26540 112 / 3e-26 Agenet domain-containing protein (.1) AT2G47230 103 / 2e-23 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G11420 101 / 9e-23 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT3G62300 101 / 1e-22 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT1G03300 96 / 6e-21 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT5G23800 86 / 1e-17 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1) AT1G06340 71 / 9e-15 Plant Tudor-like protein (.1) AT5G58610 57 / 2e-08 PHD finger transcription factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017088 [exp] 723 / 0 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10000615 [exp] 174 / 3e-48 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 176 / 6e-48 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10002437 [exp] 112 / 2e-26 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10004508 [exp] 106 / 5e-24 AT2G47230 167 / 9e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10010060 [exp] 105 / 6e-24 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10010903 [exp] 97 / 2e-21 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10027325 [exp] 90 / 4e-21 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10031429 [exp] 89 / 5e-19 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011100 [exp] 197 / 8e-59 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 184 / 5e-54 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.002G192300 [exp] 123 / 9e-30 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.014G117800 [exp] 122 / 1e-29 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.010G149301 [exp] 84 / 2e-19 AT3G06520 71 / 1e-15 agenet domain-containing protein (.1) Potri.009G151200 [exp] 84 / 2e-19 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.009G155250 [exp] 59 / 8e-11 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.008G119400 [exp] 59 / 5e-09 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.010G126700 [exp] 57 / 1e-08 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G072600 [exp] 57 / 3e-08 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10037805 pacid=23167243 polypeptide=Lus10037805 locus=Lus10037805.g ID=Lus10037805.BGIv1.0 annot-version=v1.0 ATGCTGAGCTCCAATCTCACCGCCGGCGACCAAGTCGAAGTTCTGAAGCGGGACTGCGTCTCCGGCCAGCTCACCTACTACCCGGCAACCGTCCTCCGCG CACCTGCCAAGCAGAAGAACAAGATTCTGATCGAGTACCATACGATCACCAACGGCGCTATTCCGACCAGGGAGCTCGTCGAGTCCGTTACCGTGAGGCC GGTGCCGCCGCTCGACTACGGCGCGTGGTTTAAAGTGGATGACGACGTCGACGCTCACTACGACGGTGGTTGGCATAGGGGAATCGTCAAGGGAATACTC GTCAACTCCAAGTACCTCGTGTCGTTCGCTCGCCTGAGCGAAGGAATCGTCTCGGAGCAGTGCACCCTGCGCCACCATCGGGAGTGGATTGACGGCGCTT GGTCCTCTCCTCCTCCTCCTCCTCCGCGGGTACAACTTACTCAGAGAAAGCCAAAATCCAGAAAGATGAATCCGAAGGTGAGACTTGAGAACAAGAAGAT GAAGATGGAGAAGTCTGAAACAATGCTGCTGGAAGAAGGATCAAAGGTGGAAGTGAAAAGGGATGATGTAGGCTTCCAAGGTGCTTGGTTTGGCGGGATT ATCGTCGATCACGTTGGGGAAGACAAGTATTTGGTGGAATATGTAGACCTCATGACTCAAGATCAAACTGGTCCATTGAGGGAAGTGGTAAATGTTGACG ACGTCAGACCCTATCCCCCTGATGATGATCAGTCACTCACTTCTTACAAATACCCTGACAAAGTTGATGCGTGGTACAATGAAGGCTGGCGGGAAGGTAT GATTTTGAGAGTGGTGGATGGATCTGATGATAACTACGTGGTTTATTTCTCAGCCACAGGCGACTCCATTGAATTTCCCAGCTCGAATATCCGCCCTCAT TTGGATTGGATCAATGGGGAATGGTTCAAGGAGAAAGTTGGGGACAACGAGGAGGAGTTGAAAAGAAATGCAAACTCATCCTCCTCCTCCTCCTACGGGA TTGGGATGAAGGTTGAGGTGAAAAGTGATGAAGCTGGTTACCAGGATGCTTGGTTTGTGGGGGTCATTGTTGCTGTAAAGGAGAATGATAGGTTTGTGGT GCAGTATGACAATTTGCTGACGGAGGATGAAACTGATTATCTTAAGGAGGAAGTGAATGCTTGTGACGTCAGGCCTCGTCCTCCACAAGTGCCAGTTACC GACCACTATGGACTGCTTGAAGTTGTGGATGCTTGGAGTAATGATGCTTGGTGGGTTGGCCATGTTATCAGAGTTCATAAAGAAATGAAGTACAGAGTCC TCTTTCCGACAAAAGAAGAACTGGAATTTGAACATTCCGAATTGAGGCCTCATCTCGAATGGACTGGTGGCTTATGGTGCTCTGTTCCTAAGGTACAATA A
AA sequence Show only first row Show all	>Lus10037805 pacid=23167243 polypeptide=Lus10037805 locus=Lus10037805.g ID=Lus10037805.BGIv1.0 annot-version=v1.0 MLSSNLTAGDQVEVLKRDCVSGQLTYYPATVLRAPAKQKNKILIEYHTITNGAIPTRELVESVTVRPVPPLDYGAWFKVDDDVDAHYDGGWHRGIVKGIL VNSKYLVSFARLSEGIVSEQCTLRHHREWIDGAWSSPPPPPPRVQLTQRKPKSRKMNPKVRLENKKMKMEKSETMLLEEGSKVEVKRDDVGFQGAWFGGI IVDHVGEDKYLVEYVDLMTQDQTGPLREVVNVDDVRPYPPDDDQSLTSYKYPDKVDAWYNEGWREGMILRVVDGSDDNYVVYFSATGDSIEFPSSNIRPH LDWINGEWFKEKVGDNEEELKRNANSSSSSSYGIGMKVEVKSDEAGYQDAWFVGVIVAVKENDRFVVQYDNLLTEDETDYLKEEVNACDVRPRPPQVPVT DHYGLLEVVDAWSNDAWWVGHVIRVHKEMKYRVLFPTKEELEFEHSELRPHLEWTGGLWCSVPKVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06520			agenet domain-containing prote...		Lus10037805 [exp]	0	1
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024905 [exp]	4.7	0.7532
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	14.3	0.7985
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	21.8	0.7869
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10035583 [exp]	22.4	0.7760
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10035793 [exp]	26.6	0.7736
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	36.8	0.7658
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	38.9	0.7711
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10007324 [exp]	39.5	0.7596
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	39.5	0.7657
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	42.8	0.7634

Compare expression of checked genes

Lus10037805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.