Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032473 [exp] 113 / 2e-30 ND / Lus10002600 [exp] 72 / 1e-14 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1) Lus10001472 [exp] 64 / 6e-13 ND / Lus10004094 [exp] 57 / 4e-11 ND / Lus10011700 [exp] 57 / 2e-10 ND / Lus10010379 [exp] 52 / 8e-08 ND / Lus10023772 [exp] 45 / 1e-05 ND / Lus10039994 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037807 pacid=23167052 polypeptide=Lus10037807 locus=Lus10037807.g ID=Lus10037807.BGIv1.0 annot-version=v1.0 ATGCACTACAATGGTGTCCTTCCCCCAGATCGGTATATGGACGGATCAGTGGCCTATTTCGACGGCATGGATCCGGATTATTTTTCAATGACAGAGATAA ACAAGATGATCGAGTTGCTGGATATCGAGTGGGAGAAATTAACTGAAGAACAAGCCAATCTACGGATGTACAAGCTTGGTTCCGACGGGGAGAAGGGTCC AACTACAGGGGAAGACGCATCTTCTAGTGTGGTGTCTACCAGGCCACCAAATTCAGAGCTTGTCTGTCTTGACTGGAAGAAGAACATTGCTTCGGTTGAT GTTGATATGGTTGACCTGGTGGAGAAGGCAGCTGATGCGGAGACGGTTCAGATGGGGGACAACCAACCTGGTGGCACGGCGATGGCTGACTTTGGAGACA ACACTGCCGGGGAGAACACAGTTGACGTCTACATGGTAGAGTTGGGAGTGAAGACAGCTAACGTAGAGCATCCACTTCAGGTGGAGCAGCCCCATGATAA CAACCTAGCCAACTGGAGATGCCCCGTGACGTGGAGATGCGTGATGGCGTTGAACAGCGTAATTGCTAACGCAGCTGAGCTAATATGGACAGAGATATTG GAGGAGTATGATATGGAATTGGCGGCTGAATTAGAAGAATGGCAGCAACAGATGGTATAG
AA sequence Show only first row Show all	>Lus10037807 pacid=23167052 polypeptide=Lus10037807 locus=Lus10037807.g ID=Lus10037807.BGIv1.0 annot-version=v1.0 MHYNGVLPPDRYMDGSVAYFDGMDPDYFSMTEINKMIELLDIEWEKLTEEQANLRMYKLGSDGEKGPTTGEDASSSVVSTRPPNSELVCLDWKKNIASVD VDMVDLVEKAADAETVQMGDNQPGGTAMADFGDNTAGENTVDVYMVELGVKTANVEHPLQVEQPHDNNLANWRCPVTWRCVMALNSVIANAAELIWTEIL EEYDMELAAELEEWQQQMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037807 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	4.6	0.8692
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	9.5	0.8292
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	11.4	0.8377
AT5G61530			small G protein family protein...		Lus10042986 [exp]	11.5	0.8357
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	13.0	0.8361
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	16.6	0.8263
AT5G35460			unknown protein		Lus10021569 [exp]	19.1	0.8339
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	19.6	0.8336
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	20.2	0.7786
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	20.4	0.8363

Compare expression of checked genes

Lus10037807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.