Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27030 348 / 7e-121 FADA, FAD4 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1) AT2G22890 303 / 1e-103 Kua-ubiquitin conjugating enzyme hybrid localisation domain (.1) AT1G62190 298 / 3e-101 Kua-ubiquitin conjugating enzyme hybrid localisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017089 [exp] 505 / 0 AT4G27030 353 / 1e-122 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G424700 [exp] 375 / 1e-131 AT4G27030 386 / 2e-135 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10520 [flax] [poplar] TMEM189_B_dmain B domain of TMEM189, localisation domain
Representative CDS sequence Show only first row Show all	>Lus10037808 pacid=23167169 polypeptide=Lus10037808 locus=Lus10037808.g ID=Lus10037808.BGIv1.0 annot-version=v1.0 ATGTCTACCTTACACAACCACAAGTTCCTTCTCAAGCTACCTCGCCATTCCAATCCGGGCCTTGGCGCCTTCCGCCATCGGATAATCACGGTACACTGTA CTGCCATGTCGTCAATCCCTCTAACCACCAAGGATCCCGGTCTGAAGTCAACATGGTCGCACCGTGCATGGATGGCAACAGGATGCACCACCGTTGTCTT TTCGCTGGCCAAGGCAGCTGTAGGAGCAGCAGCCAGCAGTACGCAGAATATTTGGTTGCAACCTTTACTCGCGGGCTACATAGGCTACATATTGGCTGAT CTCGGCTCGGGAGTGTACCATTGGGGTATCGATAATTACGGCGACGAGTCCACACCAGTTTTCGGTTCACAAATTGAAGCGTTCCAAGGTCACCACAGGT GGCCCTGGACTATTACCAGGCGCCAGTTCGCCAACAACCTACACTCGCTGGCTCGTGTAGTGGCGTTGTGTGTGTTACCAGTCGAGCTAATGTGCAATGA CCCTACTGTCCTCGGGTTCGCGGGGATGTTTTCTGGGTGTATTATGTTCAGCCAGCAGTTCCATGCTTGGGCTCACGGCACAAAGAGCAAGTTGCCGTCA TTGGTGGTGGCGTTGCAGGATGCCGGAGTTTTGGTGTCAAGGGGACAGCACGCGGAGCATCACAGGGCGCCTTACAACAACAATTACTGCATAGTGAGTG GGATCTGGAACCAGTTTCTGGATCAACACAAGGTGTTTCAGGCATTGGAGATGGTGCTGTATTTCAAGTTTGGCGTCAAACCGCGGTCCTGGAGTGACCC CAACTCCGCCTGGACAGAACAAGAACAAGAAGAAGAGGTTATTCAGGAAAACTGA
AA sequence Show only first row Show all	>Lus10037808 pacid=23167169 polypeptide=Lus10037808 locus=Lus10037808.g ID=Lus10037808.BGIv1.0 annot-version=v1.0 MSTLHNHKFLLKLPRHSNPGLGAFRHRIITVHCTAMSSIPLTTKDPGLKSTWSHRAWMATGCTTVVFSLAKAAVGAAASSTQNIWLQPLLAGYIGYILAD LGSGVYHWGIDNYGDESTPVFGSQIEAFQGHHRWPWTITRRQFANNLHSLARVVALCVLPVELMCNDPTVLGFAGMFSGCIMFSQQFHAWAHGTKSKLPS LVVALQDAGVLVSRGQHAEHHRAPYNNNYCIVSGIWNQFLDQHKVFQALEMVLYFKFGVKPRSWSDPNSAWTEQEQEEEVIQEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	0	1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	1.0	0.9646
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	2.0	0.9425
AT5G55570			unknown protein		Lus10008950 [exp]	3.5	0.9418
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	5.7	0.9211
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10021995 [exp]	5.9	0.9248
					Lus10017075 [exp]	7.1	0.9130
					Lus10017606 [exp]	7.2	0.9071
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	8.0	0.9048
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	8.8	0.9121
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	9.2	0.9235

Compare expression of checked genes

Lus10037808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.