Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54860 537 / 0 Major facilitator superfamily protein (.1) AT1G04570 119 / 1e-28 Major facilitator superfamily protein (.1) AT1G64890 118 / 1e-28 Major facilitator superfamily protein (.1) AT2G33280 110 / 5e-26 Major facilitator superfamily protein (.1) AT2G32040 103 / 2e-23 Major facilitator superfamily protein (.1) AT5G25050 97 / 3e-21 Major facilitator superfamily protein (.1) AT1G79710 96 / 5e-21 Major facilitator superfamily protein (.1) AT5G25040 90 / 6e-19 Major facilitator superfamily protein (.1.2.3) AT5G10820 87 / 5e-18 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017090 [exp] 271 / 1e-85 AT5G54860 391 / 3e-133 Major facilitator superfamily protein (.1) Lus10026893 [exp] 105 / 9e-24 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 104 / 1e-23 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10023708 [exp] 102 / 9e-23 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10003419 [exp] 102 / 9e-23 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 96 / 7e-21 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 95 / 3e-20 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 93 / 9e-20 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10024977 [exp] 91 / 3e-19 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G137300 [exp] 578 / 0 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 560 / 0 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 115 / 3e-27 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 110 / 1e-25 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 103 / 3e-23 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 102 / 4e-23 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 101 / 2e-22 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 100 / 3e-22 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 99 / 7e-22 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 99 / 7e-22 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10037809 pacid=23167058 polypeptide=Lus10037809 locus=Lus10037809.g ID=Lus10037809.BGIv1.0 annot-version=v1.0 ATGATAGAATGGACGAAGCAGATGAAGAGGTCATTCGGGGGTTCATTTCTTTGGCTCGTTTGCTTGATTTACTTCACTCAGGGATTCAGATCATTTGTAT GGACGGCAGTTTCCTACCAGCTTAAAGACAAGCTGAAATTATCACCATCAGCCTCTCAGTTTGTTTCTTCAGTGGCATTCTTTCCATGGAGCATTAAACC ACTATATGGAATTGTGTCTGATTGCATCTCCATTAAAGGAAGAAAAAGGATACCATACCTTCTCATTGCCACAGTCCTCTCACTTGTACCATGGCCGATA TTAGGTCTGAATTCAACTTTCAGGAACTCAAGCTGGTACCTTATGGTCTTGTTGACAGCACAAAACCTGGGTTCTGCAATGGCAGATGTTGTTGTTGATG CAATGATCGCCGAGGCAGTGAGGTTTGAGAAGTATGTGAACCAGACTTGCTCATTCTACTTAAAAATTGAACTTAAAGTATATTCTCTGATTTTATCCAT GAAAAATCCAGTTCTGAAGGTTGCCCAATCGCATAATGTATCTTGGGCTTCTTTTGCTGGAGATCTACAGTCGCTTTCTTGGTTTTCAATGGCTCTGGGT GGAATATGTGGAAGCTTATTGGGAGGATTTGCATTATCTAATTTACCAATTGATACAATTTTTCTTCTGTTCTCTGTATTGCCGGCAATACAACTGTTTT CCTGTTGTTTGGTTGAGGAGAATCCAGTAGTCAGTGAGGATGTTTCTACATCTGATGATTCTGACGATGCGAATGGGAGTAGTCATTCAGATGACAACAG TTACTTCTCGAGGAAGTCTACCACAACTAGCTCAAGGAGAAGAAAAAAGCAGAAGAAAGGCAAAAAGAAGAAATTCAGCACTAAATCCCAGGTAGTAGAG AAACGGAATAGTGGGAAGCTGGGTTGGTACTATTCTCTGAAATCAGCCAGTTACAGTTTGTTACAAGCTTTCAGGCAGCCGATCATACTAAGACCAATGG CTTGGTTCTTTCTAGCACACATCACTTTTCCAAACCTCTCAACAGTCATGTTCTATTACCAGACGGAGTTCCTGAACTTGGATGCATCTTTTTTGGGGAC TACTCGTGTTGTTGGCTGGTTGGGCCTCATGCTTGGGACTTTTGTATACAATCGACACTTGAAAACCATGAAGCTACGAACCATTCTATTATACACACAC ATCGGATTGTCCTTGCTTACTTTCCTAGACATTGTTTTGGTGTCCCGGATGAATCTTGCTTATGGAATTACAGATAAGCATATGGTCCTCTTTGGATCTG CCCTTGCTGATGCAATTAACCAATTCAAGTTCATGCCATTCCTCATATTATCTGGGCAGTTGTGCCCACCAGGAATTGAAGGAACTCTATTTGCGCTCTT CATGTCTATAAACAACTTTGGTTCAACAGTTGGATCGTTTGTGGGTGCTGGGTTGGCATCGCTCTTGAACCTCTCGTCGGGTTCTTACGACAATCTTGTA CTGGGAATTGCTATCCAAGTGGCCTGCATCTACTTTCCTGTCCTTTTCCTATTCCTGATACCAAAAGAAGCTACAGGGGTATCCAGCACGTAG
AA sequence Show only first row Show all	>Lus10037809 pacid=23167058 polypeptide=Lus10037809 locus=Lus10037809.g ID=Lus10037809.BGIv1.0 annot-version=v1.0 MIEWTKQMKRSFGGSFLWLVCLIYFTQGFRSFVWTAVSYQLKDKLKLSPSASQFVSSVAFFPWSIKPLYGIVSDCISIKGRKRIPYLLIATVLSLVPWPI LGLNSTFRNSSWYLMVLLTAQNLGSAMADVVVDAMIAEAVRFEKYVNQTCSFYLKIELKVYSLILSMKNPVLKVAQSHNVSWASFAGDLQSLSWFSMALG GICGSLLGGFALSNLPIDTIFLLFSVLPAIQLFSCCLVEENPVVSEDVSTSDDSDDANGSSHSDDNSYFSRKSTTTSSRRRKKQKKGKKKKFSTKSQVVE KRNSGKLGWYYSLKSASYSLLQAFRQPIILRPMAWFFLAHITFPNLSTVMFYYQTEFLNLDASFLGTTRVVGWLGLMLGTFVYNRHLKTMKLRTILLYTH IGLSLLTFLDIVLVSRMNLAYGITDKHMVLFGSALADAINQFKFMPFLILSGQLCPPGIEGTLFALFMSINNFGSTVGSFVGAGLASLLNLSSGSYDNLV LGIAIQVACIYFPVLFLFLIPKEATGVSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54860			Major facilitator superfamily ...		Lus10037809 [exp]	0	1
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10019627 [exp]	27.5	0.5951
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10037329 [exp]	58.6	0.5686
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10015215 [exp]	204.9	0.4579

Compare expression of checked genes

Lus10037809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.