Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17180 533 / 0 SCPL33 serine carboxypeptidase-like 33 (.1) AT5G23210 431 / 2e-147 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT1G11080 421 / 1e-143 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT4G15100 413 / 1e-140 SCPL30 serine carboxypeptidase-like 30 (.1) AT1G61130 411 / 2e-140 SCPL32 serine carboxypeptidase-like 32 (.1) AT5G08260 407 / 2e-138 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 395 / 8e-134 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 390 / 5e-132 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G35780 384 / 8e-130 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G07990 383 / 3e-129 SCPL27 serine carboxypeptidase-like 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011213 [exp] 421 / 4e-144 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10010190 [exp] 421 / 9e-144 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10018467 [exp] 420 / 2e-143 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10017391 [exp] 417 / 4e-142 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10019954 [exp] 402 / 2e-136 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 401 / 1e-135 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 375 / 1e-125 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10023505 [exp] 368 / 2e-123 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 362 / 4e-121 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149400 [exp] 579 / 0 AT3G17180 564 / 0.0 serine carboxypeptidase-like 33 (.1) Potri.011G046600 [exp] 423 / 8e-145 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.007G072300 [exp] 418 / 8e-143 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.005G091700 [exp] 416 / 8e-142 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.004G037800 [exp] 408 / 8e-139 AT1G11080 653 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.005G091800 [exp] 407 / 2e-138 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.018G105700 [exp] 394 / 2e-133 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.006G183200 [exp] 393 / 3e-133 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.008G041800 [exp] 380 / 3e-128 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 377 / 6e-127 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10037810 pacid=23167210 polypeptide=Lus10037810 locus=Lus10037810.g ID=Lus10037810.BGIv1.0 annot-version=v1.0 ATGGAAATGTGGGCCAAGACTACTGTTACAGCCCTTAACTTACTTTATCTCATATATGTAACGGTTGGTTCTTCAGATATTCGGAGCACTGGGGCAGAAG CATTCCCGGTATCCCAGGAATCTGACAGAATTCTTAATTTGCCATTTCAACCTTCCAGCCCACCTCTATCACAGTTTGCAGGGTATGTTACAACGAATGA AGAACACGAAAGAGCTCTTTTCTACTGGTTCTTTGAAGCTCAAACCAACCCATCCACGAAGCCTCTGCTTCTTTGGCTAAATGGAGGTCCTGGCTGTTCA TCAATCGGATTCGGTGCAGCAGCAGAGTTGGGACCCTTAAGAGTCGGTGAAAATGGAGATTATCTTTACTACAACAAATTTGCTTGGAACAAAGAAGCAA ACTTGTTGTTTCTTGAATCTCCAGTTGGAGTTGGATTCTCGTACACCAATACATCGTCTGATCCTACCATCCTGAATGATGCTTTAGTGGCTGAAGATGC ATACACTTTTTTGGTGAATTGGCTGCAGAGATTTCCTCAATACAAAAATCGTGATTTCTTCATAGCAGGGGAGAGTTATGCAGGTCACTATGTACCTCAA CTTGCAGAGCTCATCCATGACAGAAACAAAGAGGCCAGGAAGTATCCAACTATCAATCTCAAAGGCGTCATGGTTGGGAATGCAGAAATAGACGATTACC ACGACTACAAAGGTTTGCTTGAATATGCATGGAGCCACTCTGTAATATCAGACCAGCAATACAACGATGCAAAACGAGAGTGTGATTTCACCAGCTTCGA CTGGCCTGGGACATGTAACGATGCCATGAGCCCTGTCTTTGATTCGTACGCCGAAATCGACATCTTTAACATCTACGCTCCGGTCTGCATCACCAATTTA TCAGCATCTTCTTCGCCGACAACAACTTTACAAGATCAGGTGATGGTTGAAAGGAGGAATCATGGGTTGGGAAGGCTGAGGATGCCTGGAGGGTATGACC CTTGTTTTACTGAGAATGCTGAGGCATACTTCAATAAAGCTGATGTCCGATTGTCCCTTCATGCAAAGAGGACAGGAAGTTGGGATAACAAATGGAAGGG CTGCAATCCTCATTTGTTGAGCAAGTACAATTTCTCTGTTTTCTCCGTTCTACCAACCTACGCCAAGCTCATCAATGGTGGAATAAAGGTGTGGATTTAC AGCGGGGACGCAGATGGGAGGGTGCCGGTCATAGGTTCACGGTATTGCGTGGAAGCTCTTGGGTTAGCTCTGAAATCTCCATGGCGTTCCTGGTTTCATC ATCATCAGGTTGCAGGAAAGGTGGTGGAATACAAAGGGGTGACGTTTGTGACAGTGAGAGGAGCTGGTCATATGGTGCCTTTGGACAAGCCCAGCGAGGC TCTGTTCCTTCTCCACTCTTTCCTTTTCAACCACTCTCTTCCCGCCCACAGATAA
AA sequence Show only first row Show all	>Lus10037810 pacid=23167210 polypeptide=Lus10037810 locus=Lus10037810.g ID=Lus10037810.BGIv1.0 annot-version=v1.0 MEMWAKTTVTALNLLYLIYVTVGSSDIRSTGAEAFPVSQESDRILNLPFQPSSPPLSQFAGYVTTNEEHERALFYWFFEAQTNPSTKPLLLWLNGGPGCS SIGFGAAAELGPLRVGENGDYLYYNKFAWNKEANLLFLESPVGVGFSYTNTSSDPTILNDALVAEDAYTFLVNWLQRFPQYKNRDFFIAGESYAGHYVPQ LAELIHDRNKEARKYPTINLKGVMVGNAEIDDYHDYKGLLEYAWSHSVISDQQYNDAKRECDFTSFDWPGTCNDAMSPVFDSYAEIDIFNIYAPVCITNL SASSSPTTTLQDQVMVERRNHGLGRLRMPGGYDPCFTENAEAYFNKADVRLSLHAKRTGSWDNKWKGCNPHLLSKYNFSVFSVLPTYAKLINGGIKVWIY SGDADGRVPVIGSRYCVEALGLALKSPWRSWFHHHQVAGKVVEYKGVTFVTVRGAGHMVPLDKPSEALFLLHSFLFNHSLPAHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Lus10037810 [exp]	0	1
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	5.2	0.8731
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	5.9	0.8063
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	18.3	0.8546
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10017223 [exp]	22.2	0.8198
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	32.0	0.8454
AT2G44890		CYP704A1	"cytochrome P450, family 704, ...		Lus10038000 [exp]	32.4	0.8043
					Lus10011947 [exp]	34.9	0.8073
AT2G28780			unknown protein		Lus10007010 [exp]	40.0	0.8312
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10024605 [exp]	40.7	0.7873
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	40.8	0.8427

Compare expression of checked genes

Lus10037810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.