Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27620 389 / 5e-136 CYCH;1 cyclin H;1 (.1) AT5G48630 62 / 6e-11 Cyclin family protein (.1.2) AT5G48640 60 / 4e-10 Cyclin family protein (.1) AT5G45190 56 / 2e-08 Cyclin family protein (.1.2) AT4G19600 54 / 8e-08 CYCT1;4 Cyclin family protein (.1) AT1G35440 51 / 3e-07 CYCT1;1 cyclin T1;1 (.1) AT2G26430 43 / 0.0002 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT4G19560 42 / 0.0005 CYCT1;2 Cyclin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017091 [exp] 571 / 0 AT5G27620 439 / 2e-155 cyclin H;1 (.1) Lus10003151 [exp] 57 / 5e-09 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 57 / 5e-09 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2) Lus10040640 [exp] 46 / 3e-05 AT5G45190 587 / 0.0 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G027700 [exp] 452 / 6e-161 AT5G27620 427 / 6e-151 cyclin H;1 (.1) Potri.002G246800 [exp] 54 / 4e-08 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2) Potri.014G194900 [exp] 51 / 3e-07 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.003G148800 [exp] 47 / 2e-05 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 46 / 2e-05 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 45 / 4e-05 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.005G097400 [exp] 45 / 8e-05 AT5G45190 550 / 0.0 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037811 pacid=23167099 polypeptide=Lus10037811 locus=Lus10037811.g ID=Lus10037811.BGIv1.0 annot-version=v1.0 ATGGCGGATTTCCAGAATTCGACCCACCGCGCCAAGTGGATCTTCACTCCTCAAGAGCTAGTCGAGAAGTACAAAACTACAAATCAAAGAGCTAAGCAAA TGCTGGAGAAGTGTGGGACTACAAAAGTAGAAGTAGATGCTGATGGATCGGTGACTCACCCTGAACCTCAAGCCCTAAACACAAAAGAAAGTGATAAGCA TTCTCGTCCGAAGTCCCTTAGTGTCGAGGAGGAAGAGTTCATGCGCGTGTACTACGAGTCTAAGCTTCGAGAAGTATGCGGTGCTTTCTACTTCCCTCAC AAAATCCAGGCAACCGCGCTTACGTACTTCAAGAGGTTCTATCTTCAATGGTCTGTCATGGAGCTTGACCCTAAACACATAATGTTAACGTGCATATATT CAGCGTGTAAGATAGAGGAAAATCACGTATCGGCTGAGGAGCTTGGTAAAGGGATTTCGCAGGATCATCAAATGATACTCAATTTTGAGTTGATAAGCCT GGGATTTGACCTTATTGTCTATGCACCTTACCGCCCGGTTGAAGGTTTTATACACGATATAGAGGATTCCTCTCATGCAGCAGACGACCAAATTCAGATG CTAAAGGACAGTGCGATCGCTGAGGTTGACAAGATCATGTTTACCAATGCACCGCTTCTGTTCACTCCGGGGCAGTTAGCATTAGCCGCTTTGCAGAATG CGAATGAGGTCCACGGGGTTGTTGACTTCGAAAGTTACCTTCATAACATTCTCATACGCCAGAGTTCGGAGCACACCGTTTCAGAGCTTCTTTCGATTTT AGAGGCCGTAAACAGTTGGGTACAGAAGTACAAATTCCCTACAGAAAAGGATATGAAGCACATTAATCGCAAGCTGAAATCGTGTTGGGGCCATGGCTCC CATGATGATAAAAAACGGGAGAAGAAATCGAAGCACAGGTCTCATAAGAGCTCACACGATTCAAGACACGCCCCAGCTCCTGCATAA
AA sequence Show only first row Show all	>Lus10037811 pacid=23167099 polypeptide=Lus10037811 locus=Lus10037811.g ID=Lus10037811.BGIv1.0 annot-version=v1.0 MADFQNSTHRAKWIFTPQELVEKYKTTNQRAKQMLEKCGTTKVEVDADGSVTHPEPQALNTKESDKHSRPKSLSVEEEEFMRVYYESKLREVCGAFYFPH KIQATALTYFKRFYLQWSVMELDPKHIMLTCIYSACKIEENHVSAEELGKGISQDHQMILNFELISLGFDLIVYAPYRPVEGFIHDIEDSSHAADDQIQM LKDSAIAEVDKIMFTNAPLLFTPGQLALAALQNANEVHGVVDFESYLHNILIRQSSEHTVSELLSILEAVNSWVQKYKFPTEKDMKHINRKLKSCWGHGS HDDKKREKKSKHRSHKSSHDSRHAPAPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	0	1
AT5G18420			unknown protein		Lus10008554 [exp]	1.0	0.9474
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	1.4	0.9447
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	2.2	0.9411
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	4.6	0.9446
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	4.7	0.9194
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	12.0	0.9414
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007242 [exp]	13.9	0.9289
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10015039 [exp]	14.7	0.9121
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10001555 [exp]	15.0	0.9098
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	15.2	0.9375

Compare expression of checked genes

Lus10037811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.