Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09060 924 / 0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G00990 486 / 2e-158 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 331 / 3e-99 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 326 / 2e-97 transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G21430 299 / 3e-87 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT3G07610 293 / 2e-84 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT2G23530 56 / 1e-07 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G67780 51 / 4e-06 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT5G38690 50 / 7e-06 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT3G13960 48 / 2e-05 GRF ATGRF5 growth-regulating factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017092 [exp] 1795 / 0 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10020033 [exp] 461 / 1e-147 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10015260 [exp] 417 / 4e-131 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 329 / 8e-97 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 305 / 2e-88 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020084 [exp] 231 / 9e-63 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10006741 [exp] 226 / 5e-62 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10025380 [exp] 217 / 3e-59 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 190 / 1e-52 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019000 [exp] 1167 / 0 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G027000 [exp] 888 / 0 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G006200 [exp] 483 / 4e-154 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G091200 [exp] 467 / 6e-148 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.011G009700 [exp] 460 / 2e-145 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 460 / 4e-144 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.015G012800 [exp] 365 / 7e-107 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G032700 [exp] 273 / 2e-77 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 246 / 5e-68 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G026950 [exp] 149 / 5e-41 AT1G09060 167 / 4e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10037812 pacid=23167252 polypeptide=Lus10037812 locus=Lus10037812.g ID=Lus10037812.BGIv1.0 annot-version=v1.0 ATGGAAAACCCTAGATCGTCGTCAGCGAACGGGGAGGACAATGTAGATATGCCGGACGATCTGCGGTGTAAGAGGTCTGATGGGAAGCAATGGAGATGCA CTGCAATGTCGATGCCGGATAAGACAGTATGTGAGAAGCATTACGTCCAGGCTAAGAGGAGGGCAGCTAACTCGGCCCTAAGGGCTAGTATGAAGAAGGC CAAGAAGAAGTCAACTGCAGCTGAGAGCGATGGGTACTTGGAGAGCAAGAGTGGCGATGAATTCGATACGCCTCTTGCAAGCATGAAAGCTGAGGACCAC AGTGTTTCAGTCTCGTCCAAGAAGCACAGAGCGGCGAGGAGTTTGTCTGAAAGGCACAGTGACGGATTCGAACGAGATGCTGAAGACGAAGACAACTGGA GATCATACAATAATACTCCACCCTTGTCTACTGGTGATTCTCCGAGAAGTAGGTTGCAAAGGAGCTTTGATGGCGTGCCTGTGACGGAATACTCTGTTGG AACCACGGAATCCTCTGAAGACACTGGAGGGCAGACTTGCCATCAATGCCAAAGAAAAGATCGAAGCAGAGTACTTTGGTGTCTCAAATGTGACAAGAGA GGCTTCTGTGACAATTGCATCGCTGCATGGTACCCTGATATTCCATGGGAAGAAATTGAGAAAGTTTGTCCTGCTTGTCGGGGTCTCTGCAACTGCAAGG CGTGTTTACGAGGGGATAATATGGTGAAGGTAAGAATACGGGAGATACCAATCCTAGACAAGTTGCAATACCTTTACTGCCTACTGTCTTCAGTACTTCC AGTAGTGAAGCAGATCCACGACGTGCAATGCTTTGAAGTAGAGCTGGAGAAGAGGCTTCGTGGAACTGATAATATAGATCTTGCCCGAGTCAAGTTGAAT GTAGATGAGCAGATGTGTTGCAACATATGCAGGACACCGATAATTGACTATCATAGGCATTGTCCTAGTTGCTCATTTGATCTGTGCCTTCACTGCTGTC AAGATCTCCGAGAAGCATCTGAATGCAGTTTTAAAGGTGAGGTGAGAAGCCTGGATAAAGGAATCGTGGCTAAGCAAGTTAAAGAATCTAGACTAAGACT AGACATATCAGATGACTATCCTCGCTGGAAGGCAAACAGTGACGGCAGCATCCCTTGTCCTCCGAGAGATTACGGTGGCTGCAATTATACTTCGACGGGT CTGAGCCGCATATTTAAGATGAACTGGGTTGCAAAGCTGGTCAAGAACGTGGAGGAAATGGTCAGTGGATGCAAAGTAAATGATGCTAGCAGTCCAGAAG AACTTTGGACGGATGATCCCACGTTATCCCAGTGTGCTTGCAGAGAGGACAGCGAAGATAATTTCTTGTATTTCCCATCTCCTGAAGATATTAAAGCTCA AGGTGTGAATGTTTTCAGAAAGCATTGGGCCAGGGGTGAACCTGTCCTTGTTAAACAAGTTTTTGACTGGGCATCCATGGCCAGCTGGGATCCAATGGAT ATATGGAGAGGAATCCTTGAAGCACCTGATGGAAAAATGAAAGACGAGAGTAGAGTGGTCAAGGCCATTGACTGCTTAAGCTGGTCTGAGGTCGATGTTG AGCTCGGTCAATTTATCAAAGGATACAAAGAAGGAAGAGCGCGTGAAGATGGTTCTGTCGAGATGTTGAAGTTGAAAGACTGGCCTTCACCCAGTGCTTC TGAAGAGTTCTTACTGTACCAACGACCCGAGTTTCTCAGTAAACTGCCTCTGCTTGAGTACATTCATTCAAGGTTGGGCCTCTTGAATGTCGCAGCAAAG TTGCCGCATTACTCTTTGCAGAATGACGTGGGACCTAAAATTTATTTGTCCTATGGCACTGCGGAAGAGCTCGGTAGAGGTGATTCTGTAGCCAATCTTC ATTTCAAAATGCGGGATATGGTTTATCTTTTGGTGCATACGCATGAGGTGAAGCCACAGGTTTGGGTTGAGAATGAGTCATCTGATTCTGAAACAAGCAC AAACGAAAGATTACTACCCCATTTATCTCATGATGGAACTGATATGCTAAATATTGGGAACACAATTGCTGATGACAATGGGATTACGGGAGATCAAGAG GTTGGGACTTCCAACGATGTTGATGGTGACGAGAGAATGAAAGAGCCAGGAGTTGCTGGTCCCATCGATGGTGACAAAGTTGAGAGGAGGAAGCATCGCC AGTCCAAGAAACACTTGGGTGGTAGTATAGCAACCGAGGCTCATCCGGGAGTTCATTGGGATGTTTTCCGTAGGCAGGATCTTCCACTGGTCGTCACATA CTTGAGAAACCACATCGAGGAGTTTAGGAATTCGTGCAATGCTGATCTGGCTACGCACTTGCTTTATGATGGAAGAATATTCTTGAATGAACATCACAAA CAAAAACTGAAGGAAGAATCAGGAGTGGAGCCATGGTCATTTGACCAGCATTTGGGGGAAGCAATATTCGTCCCGGCTGGTTGCCCATTCCAAGTCAGGA ATCTACAGTCCACCGTTCAATTGGCCTTTGATTTCCTATCTCCTGAGAGCGTGGGAGAGGCTGCGAGATTAGGGGATGAAATTCGTTGCTTGCCAAATGA CCATGAAGCTAAAATTCAAGTTATGGAGGTGGGGAAGATATCGCTGTATGCTGCTAGTTCATCCATTAAAGAAGTCCAGAAATTGGTGCTTGATCCAAAA TTCAGTACAGAGATTGGCTTCGAGGATCCAAATTTGACGGCTTCGATTTTGGAGAACTTGGAGAAGCTTACAGGTCCGAGACTGGGACAGATAAGTTGTG CATGA
AA sequence Show only first row Show all	>Lus10037812 pacid=23167252 polypeptide=Lus10037812 locus=Lus10037812.g ID=Lus10037812.BGIv1.0 annot-version=v1.0 MENPRSSSANGEDNVDMPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYVQAKRRAANSALRASMKKAKKKSTAAESDGYLESKSGDEFDTPLASMKAEDH SVSVSSKKHRAARSLSERHSDGFERDAEDEDNWRSYNNTPPLSTGDSPRSRLQRSFDGVPVTEYSVGTTESSEDTGGQTCHQCQRKDRSRVLWCLKCDKR GFCDNCIAAWYPDIPWEEIEKVCPACRGLCNCKACLRGDNMVKVRIREIPILDKLQYLYCLLSSVLPVVKQIHDVQCFEVELEKRLRGTDNIDLARVKLN VDEQMCCNICRTPIIDYHRHCPSCSFDLCLHCCQDLREASECSFKGEVRSLDKGIVAKQVKESRLRLDISDDYPRWKANSDGSIPCPPRDYGGCNYTSTG LSRIFKMNWVAKLVKNVEEMVSGCKVNDASSPEELWTDDPTLSQCACREDSEDNFLYFPSPEDIKAQGVNVFRKHWARGEPVLVKQVFDWASMASWDPMD IWRGILEAPDGKMKDESRVVKAIDCLSWSEVDVELGQFIKGYKEGRAREDGSVEMLKLKDWPSPSASEEFLLYQRPEFLSKLPLLEYIHSRLGLLNVAAK LPHYSLQNDVGPKIYLSYGTAEELGRGDSVANLHFKMRDMVYLLVHTHEVKPQVWVENESSDSETSTNERLLPHLSHDGTDMLNIGNTIADDNGITGDQE VGTSNDVDGDERMKEPGVAGPIDGDKVERRKHRQSKKHLGGSIATEAHPGVHWDVFRRQDLPLVVTYLRNHIEEFRNSCNADLATHLLYDGRIFLNEHHK QKLKEESGVEPWSFDQHLGEAIFVPAGCPFQVRNLQSTVQLAFDFLSPESVGEAARLGDEIRCLPNDHEAKIQVMEVGKISLYAASSSIKEVQKLVLDPK FSTEIGFEDPNLTASILENLEKLTGPRLGQISCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	0	1
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	2.0	0.9238
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	2.0	0.9365
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	3.5	0.9170
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	3.9	0.9177
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	4.2	0.9019
AT1G01880			5'-3' exonuclease family prote...		Lus10036554 [exp]	4.2	0.8855
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	4.5	0.9151
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	4.9	0.9024
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	5.2	0.8773
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	6.9	0.9089

Compare expression of checked genes

Lus10037812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.