Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27660 462 / 2e-161 Trypsin family protein with PDZ domain (.1) AT3G27925 118 / 5e-29 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT5G39830 118 / 7e-29 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT4G18370 90 / 1e-19 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT2G47940 68 / 4e-12 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT1G65640 59 / 3e-09 DEGP4 DegP protease 4 (.1) AT5G36950 54 / 2e-07 DEGP10 DegP protease 10 (.1) AT1G65630 51 / 1e-06 DEGP3 DegP protease 3 (.1) AT5G40560 50 / 2e-06 DEGP13 DegP protease 13 (.1) AT5G40200 50 / 3e-06 DEGP9 DegP protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017093 [exp] 643 / 0 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10008781 [exp] 119 / 3e-29 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 108 / 9e-26 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10022234 [exp] 100 / 2e-22 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10042822 [exp] 94 / 9e-21 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10028120 [exp] 81 / 3e-16 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10032163 [exp] 58 / 8e-09 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 56 / 5e-08 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10008726 [exp] 49 / 5e-06 AT5G36950 443 / 7e-153 DegP protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018300 [exp] 516 / 0 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.018G001500 [exp] 115 / 7e-28 AT5G27660 102 / 2e-23 Trypsin family protein with PDZ domain (.1) Potri.001G348800 [exp] 114 / 1e-27 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.018G001301 [exp] 109 / 2e-26 AT5G27660 119 / 4e-30 Trypsin family protein with PDZ domain (.1) Potri.004G129200 [exp] 110 / 4e-26 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.018G001550 [exp] 107 / 2e-25 AT5G27660 102 / 1e-23 Trypsin family protein with PDZ domain (.1) Potri.011G083300 [exp] 92 / 2e-20 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.002G207200 [exp] 71 / 6e-13 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.014G135200 [exp] 70 / 1e-12 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.012G077900 [exp] 64 / 8e-11 AT5G40200 845 / 0.0 DegP protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10037815 pacid=23167333 polypeptide=Lus10037815 locus=Lus10037815.g ID=Lus10037815.BGIv1.0 annot-version=v1.0 ATGACTCGGCCGAGTTGTGAATCAGCGGAGACTCAGCTCGACATCAATCAATTTCACTTGCGGATGTGCGCCGGCGCCATCGCCATGAATCGGTTACTGA GAAAAGCTTCGTTCTTTCGGATCGCTGCGGCCGCCGGCGGTGGAGCAGTTCTTTTTTACACTAATGATGATCCTATTTCCAGACCGAGGATATCATTCTC AGTTCCTGAGCAATGGCGCTTATCACAATACTTGATTTCTTCCATTTCAGCAGAACGCTGGCAGTTTGGAAGTCTTTCGTTCTTTTCGTCTAGATTCAAT CTTGTTCCTGACATCAGCAATGGAAGGAGTAGTGAAAGTGTTGGAGATGGCCACAAAGCAAGCCGTGGGTGTTTGGGGAGGGATACAATTGCCAATGCAG CTGCTAGGGTTGCCCCAGCTGTTGTTAATCTTTCTGCTCCACAAGGGTTCTACGGGTTCCCTGGTGGAAAGAGCATTGGCTCTGGGACGATTATAGACGC AAATGGCACTATCTTGACATGTGCTCACGTCGTTGTTGATTACCGCGGCATGCAACCCATGAATCCCTCATCTAAGAGAAAGATAGGTGTGACGTTGCAA GATGGCCGAACATTCGAAGGTACAGTCCTGAATGTTGATTTACATTCTGACATTGCCATTGTGAAGATAAACTCCAAAACTCCATTGCCAACCGCCAAAC TCGGTTCATCAAGTAAGATCCGACCTGGGGAATGGGTGCTGGCCGTGGGCTGCCCATTGTCTCTGCAGAATACTGTTACAATGGGCATCATAAGCTGCGT TGATCGTAAAAGCAGTGACCTGGGTCTTGGAGGAGTTTGGAGAGAGTATCTACAGACAGATTGTGCTACCAATGCGGGAAATTCGGGTGGACCACTCGTT AACATCGATGGGGAAGTCGTCGGAGTCAATATCATGAAAGTACTGGCCGCAGATGGGCTGAGTTTCGCTGTTCCGATTGATTCAGTTGCCAAAATCGTTG AGCATTTCCGGAAGAGTGGAAGAGTCGTACGACCTTGGCTTGGCCTGAGAATGATCGAACTGAACGACATGATCATTGCTCAGCTGAAGGAGGGAGATCC CACATTCCCTGATGTGCACGATGGCATCTTCGTACCTATGGTAACACCAGGATCACCTGCAGACAATGCAGGATTCCGACCGGGTGATGTCTTGGTCCAA TTCGACGAAAAACCCGTTGGAAGCATCAAAGAGGTGATCGATCTCATGGATGATAGAGTAGGCGTGGCTTTGAAAGCTGTAGTGAAGAGGCCAAAGGGCG TTACAGTCACCTTGACGGTCATCCCTGAAGAAGGAAACGCAGACATTTGA
AA sequence Show only first row Show all	>Lus10037815 pacid=23167333 polypeptide=Lus10037815 locus=Lus10037815.g ID=Lus10037815.BGIv1.0 annot-version=v1.0 MTRPSCESAETQLDINQFHLRMCAGAIAMNRLLRKASFFRIAAAAGGGAVLFYTNDDPISRPRISFSVPEQWRLSQYLISSISAERWQFGSLSFFSSRFN LVPDISNGRSSESVGDGHKASRGCLGRDTIANAAARVAPAVVNLSAPQGFYGFPGGKSIGSGTIIDANGTILTCAHVVVDYRGMQPMNPSSKRKIGVTLQ DGRTFEGTVLNVDLHSDIAIVKINSKTPLPTAKLGSSSKIRPGEWVLAVGCPLSLQNTVTMGIISCVDRKSSDLGLGGVWREYLQTDCATNAGNSGGPLV NIDGEVVGVNIMKVLAADGLSFAVPIDSVAKIVEHFRKSGRVVRPWLGLRMIELNDMIIAQLKEGDPTFPDVHDGIFVPMVTPGSPADNAGFRPGDVLVQ FDEKPVGSIKEVIDLMDDRVGVALKAVVKRPKGVTVTLTVIPEEGNADI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27660			Trypsin family protein with PD...		Lus10037815 [exp]	0	1
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10029173 [exp]	9.5	0.8020
					Lus10031226 [exp]	15.9	0.7875
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013352 [exp]	19.1	0.7991
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10017742 [exp]	22.2	0.7633
AT5G59460			scarecrow-like transcription f...		Lus10001576 [exp]	23.1	0.7893
AT2G41760			unknown protein		Lus10007544 [exp]	33.3	0.7564
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025520 [exp]	39.3	0.7428
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017993 [exp]	41.6	0.7815
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10034167 [exp]	47.6	0.7762
AT4G38170		FRS9	FAR1-related sequence 9 (.1)		Lus10013855 [exp]	50.5	0.7823

Compare expression of checked genes

Lus10037815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.