Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02400 298 / 3e-101 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 263 / 3e-87 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G30040 254 / 1e-83 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 234 / 8e-76 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G78440 209 / 2e-66 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT1G78550 117 / 1e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 110 / 7e-28 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT3G21420 106 / 2e-26 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 105 / 4e-26 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G15550 104 / 7e-26 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017094 [exp] 536 / 0 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10025016 [exp] 300 / 1e-101 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 297 / 1e-100 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 292 / 1e-98 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 195 / 9e-61 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 158 / 5e-48 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10006350 [exp] 127 / 4e-34 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 127 / 5e-34 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10015016 [exp] 120 / 1e-31 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101600 [exp] 353 / 7e-123 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 348 / 6e-121 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.002G191900 [exp] 326 / 5e-112 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.014G117300 [exp] 316 / 4e-108 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.011G095600 [exp] 270 / 2e-89 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.001G378400 [exp] 265 / 7e-88 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 253 / 4e-83 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.015G002800 [exp] 118 / 4e-31 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G151300 [exp] 115 / 7e-30 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 114 / 2e-29 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10037816 pacid=23167362 polypeptide=Lus10037816 locus=Lus10037816.g ID=Lus10037816.BGIv1.0 annot-version=v1.0 ATGGCTCAGGAGGGACTCGGGTTCTTCGGCCGACCCGCCCAGGAGAAGCAGCGGGCCGGACCCGCCGACCCGTTCGGGTACGGGTGCAAGAACATCGGGT TCAACGGCGACGTCGGGGAAGTCGAGTACGTGATGCTGAATACCGATCCTCGCTCCATTGCTGAAAAGTCGTTGACCATCAACTCCAACGACCCGACGAC GTTCAGTTCGACTGTGAGCGGGTATATAGAAGCGGTGAAAGAAGTAGCATGCGAGATATTAGATTTGATGGCGGAAGGGATGCAGATACCGAATACGTCG GTATTTAGTGATCTAATCAGGGACGTCTATAGCGATTCCGTTCTTCGTCTCAATCACTACCCTCCATTTCTCCTCCCTTCACCACCAACTGTCGATCACG ACGAGGCCCAAGTTGCCACGATAGGATTCGGAGCGCATACTGACCCTCAAATCTTGACCATCTTAACATCCAACGAAGTTCCTGGCCTCCAAATCTACGT AAATCCGGACACGTGGGTCCCCGTATCGCCTGACCCCACCGCCTTCTTCGTTAATGTTGGTGACGTATTACAGGCGATGACAAATGGAAGAATGATAAGC GTAAAGCACAGGGCCCTCAACCTCAACTCGCCAAAGTCCAGGATGTCAATGGCGTATTTCGCAGCCCCACCATTGGAAACCACCATCTCTGTTCTGCCTC AAATGATTACTCCTTCCAGCCCCAATTGTCTCTTCAGGCCTTTCACTTGGGCTGATTACAAGAAGGCAGCTTACTCCCTTCGCCTTGGAGATTCACGCCT CGACCTTTTCACTGTTCCTAACTCCTAA
AA sequence Show only first row Show all	>Lus10037816 pacid=23167362 polypeptide=Lus10037816 locus=Lus10037816.g ID=Lus10037816.BGIv1.0 annot-version=v1.0 MAQEGLGFFGRPAQEKQRAGPADPFGYGCKNIGFNGDVGEVEYVMLNTDPRSIAEKSLTINSNDPTTFSSTVSGYIEAVKEVACEILDLMAEGMQIPNTS VFSDLIRDVYSDSVLRLNHYPPFLLPSPPTVDHDEAQVATIGFGAHTDPQILTILTSNEVPGLQIYVNPDTWVPVSPDPTAFFVNVGDVLQAMTNGRMIS VKHRALNLNSPKSRMSMAYFAAPPLETTISVLPQMITPSSPNCLFRPFTWADYKKAAYSLRLGDSRLDLFTVPNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10037816 [exp]	0	1
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	1.0	0.9773
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	1.4	0.9767
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10028271 [exp]	1.7	0.9723
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028220 [exp]	2.2	0.9634
					Lus10043397 [exp]	2.6	0.9592
AT1G67910			unknown protein		Lus10023632 [exp]	2.8	0.9659
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	10.4	0.9618
AT1G49570			Peroxidase superfamily protein...		Lus10020994 [exp]	10.8	0.9230
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10024812 [exp]	10.9	0.9340
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	13.4	0.9569

Compare expression of checked genes

Lus10037816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.