Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06500 906 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT1G56560 868 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 853 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT5G22510 759 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT4G34860 595 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT4G09510 593 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 590 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 586 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G72000 578 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017095 [exp] 1282 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10031431 [exp] 904 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10010900 [exp] 901 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10043375 [exp] 774 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 770 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10033144 [exp] 603 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 600 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10014824 [exp] 595 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 594 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101500 [exp] 1022 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.005G010800 [exp] 908 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.013G006600 [exp] 903 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 754 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G186500 [exp] 745 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 743 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G167500 [exp] 601 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 598 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 594 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.013G110800 [exp] 591 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10037817 pacid=23167112 polypeptide=Lus10037817 locus=Lus10037817.g ID=Lus10037817.BGIv1.0 annot-version=v1.0 ATGAGCACCAGTAGTTCAATCGGAATCTCTACCATGAAGCCCTGTTGTAGAATCCTCATAGGGTATAGGGGATCTTCACTCTTTGGATCTCGTGCCCGGA TGTTAGAGAATCCCAATTCGTTGAAATCGCATTCGAAATCGATCCATGCCCGTGGATCGTACTTCTTACGTAGTAGGTATAATGACAGGTCTAGATGTAT AGTTCCGAGATGTATAGCTCAACCTAGTATCCGTGGAGCTTTTAGTATCTCCACTTCTTCCAATTGCGCCCAATCTGTGGCTGGTTTTTATGCCAACAGA GGTTGTAATAGTATGAGTAGTAGTAGTAAGAGGGGTGTTTTATTAATCCCCAGGGTTGCGTCGAATTATAGGAACCATTCGACGTCTTTAGATAGTCATA GTAATGAGAAAGGGTTCGAGTCGATTTACATTCAAGGAGGGTTGAATGTGAACCCTCTAGTGATTGAAAAGATTGAAAATGGAATTGAAAAAGAAGAAGG GAAGTCTAGTAGTAGGATAGTTGTGAACGGGTCTAGTGTAGACTTGGATTATTTCAAGAAGTTGAATGAAAAACCCACAACCACTTCTAAGGACGAGCGA GTTGTGTCTGAGGTTGAGAAAGAGGCTTGGAAGTTGCTTCGAGCTGCCACTGTTTCGTACTGTGGAAATCCTGTTGGGACTGTTGCTGCTAATGATCCTG GTGATAAGCAACCTTTGAACTACGATCAAGTCTTCATTCGTGATTTCGTCCCGTCTGCCCTTGCTTTTTTGCTTAATGGGGATGGTGAGATCGTCAAGAA CTTCCTCCTTCACACATTGCAGTTACAGAGTTGGGAGAAGACTGTGGACTGTTACAGTCCTGGACAAGGGTTAATGCCAGCAAGCTTCAAAGTTAGATAT GTGCCTTTAGAAGGAGCTGAAGGAGAATTTGAAGAGGTTCTTGATCCTGATTTTGGTGAATCAGCCATTGGCCGTGTTGCCCCTGTTGATTCAGGGTTAT GGTGGATTATTATGTTGAGAGCCTACGGGAAGATCACTGGGGACTATGCATTGCAAGAGAGGGTTGATGTCCAGACAGGCATAAGACTGATACTTAACTT GTGTTTAAGTGATGGATTCGACATGTTCCCTACTCTATTAGTCACTGATGGTTCGTGCATGATTGATCGACGGATGGGTATTCATGGACATCCTCTCGAA ATCCAGGCTTTGTTCTATTCTGCTCTCCGATGTGGCCAGGAGATACTCACAGTCAATGATGGAACCAAGAACTTGGTGGCTGCAATCAATAAGCGTCTCA GTGCACTCTCATTTCACATGAGAGAGTATTATTGGCTGGATATGAAGAAGATCAATGAAATCTATCGATACAAAACTGAGGAATACTCAACTGATGCAGT CAATAAGTTCAATATCTATCCTGAACAAATCCCTACTTGGCTTGTGGACTGGATCCCAGAGAAAGGCGGCTACCTAATGGGTAACCTTCAACCTGCTCAT ATGGACTTCAGGTTCTTCACTCTCGGCAATCTTTGGGCCATTATTTCCTCTTTGGGAACTCGCGAACAGAGCGAAGGTATATTGAACTTGATCGATGAGA AATGGGACGATCTCGTATCCCATATGCCTCTTAAGATCAGCTACCCAGCTTTGGAAGGAGAAGAATGGCGCATAATTACCGGCAGCGATCCTAAGAACAC GCCATGGTCATATCACAATGGTGGATCCTGGCCAACACTCCTATGGCAGTTCACATTGGCGTGCATCAAGATGGGAAGACCAGAACTGGCACAGAAGGCC GTGAGTCTTGCAGAGCAAAGGCTATCAGAAGATCAATGGCCCGAATACTACGATACTCGTGGTGGACGGTTCATAGGCAAACAATCTCGCAACTACCAGA CATGGACCATTGCCGGCTTCCTAACGTCAAAGATGCTTTTGGAGAACCCAGAGAAGGCATCTTTACTGTTCTGGGAAGAGGACTATGAGCTGCTTGAGAC TTGTGTTTGTGGGTTAGGCAAAACCAGTCGTGCGAAATGCTCTCGGTTTGCAGCCAGGTCACAGGATGGTACCTGA
AA sequence Show only first row Show all	>Lus10037817 pacid=23167112 polypeptide=Lus10037817 locus=Lus10037817.g ID=Lus10037817.BGIv1.0 annot-version=v1.0 MSTSSSIGISTMKPCCRILIGYRGSSLFGSRARMLENPNSLKSHSKSIHARGSYFLRSRYNDRSRCIVPRCIAQPSIRGAFSISTSSNCAQSVAGFYANR GCNSMSSSSKRGVLLIPRVASNYRNHSTSLDSHSNEKGFESIYIQGGLNVNPLVIEKIENGIEKEEGKSSSRIVVNGSSVDLDYFKKLNEKPTTTSKDER VVSEVEKEAWKLLRAATVSYCGNPVGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLNGDGEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRY VPLEGAEGEFEEVLDPDFGESAIGRVAPVDSGLWWIIMLRAYGKITGDYALQERVDVQTGIRLILNLCLSDGFDMFPTLLVTDGSCMIDRRMGIHGHPLE IQALFYSALRCGQEILTVNDGTKNLVAAINKRLSALSFHMREYYWLDMKKINEIYRYKTEEYSTDAVNKFNIYPEQIPTWLVDWIPEKGGYLMGNLQPAH MDFRFFTLGNLWAIISSLGTREQSEGILNLIDEKWDDLVSHMPLKISYPALEGEEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRPELAQKA VSLAEQRLSEDQWPEYYDTRGGRFIGKQSRNYQTWTIAGFLTSKMLLENPEKASLLFWEEDYELLETCVCGLGKTSRAKCSRFAARSQDGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10037817 [exp]	0	1
					Lus10032008 [exp]	3.2	0.8702
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	5.5	0.8765
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	6.9	0.8554
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	9.5	0.8227
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10042322 [exp]	11.5	0.8419
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	12.0	0.8453
AT5G47040		LON2	lon protease 2 (.1)		Lus10001083 [exp]	12.8	0.8536
AT1G15670			Galactose oxidase/kelch repeat...		Lus10029329 [exp]	15.3	0.7072
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	15.9	0.7865
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	16.0	0.8141

Compare expression of checked genes

Lus10037817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.