Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49230 169 / 5e-53 HRB1 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) AT3G06760 169 / 2e-52 Drought-responsive family protein (.1.2) AT3G05700 136 / 5e-40 Drought-responsive family protein (.1) AT5G26990 130 / 2e-37 Drought-responsive family protein (.1) AT1G56280 127 / 2e-36 ATDI19 drought-induced 19 (.1.2) AT4G02200 113 / 6e-31 Drought-responsive family protein (.1.2.3) AT1G02750 99 / 3e-25 Drought-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017097 [exp] 274 / 2e-94 AT5G49230 131 / 2e-38 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10031467 [exp] 154 / 1e-46 AT5G26990 253 / 1e-85 Drought-responsive family protein (.1) Lus10037717 [exp] 137 / 4e-37 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10013420 [exp] 116 / 6e-32 AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2) Lus10001462 [exp] 103 / 7e-27 AT3G05700 124 / 5e-35 Drought-responsive family protein (.1) Lus10015214 [exp] 100 / 2e-26 AT5G26990 194 / 5e-63 Drought-responsive family protein (.1) Lus10010305 [exp] 100 / 1e-25 AT3G06760 108 / 5e-29 Drought-responsive family protein (.1.2) Lus10002441 [exp] 79 / 5e-19 AT5G26990 95 / 3e-25 Drought-responsive family protein (.1) Lus10015412 [exp] 82 / 8e-19 AT5G26990 123 / 1e-34 Drought-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000800 [exp] 211 / 2e-69 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.008G213400 [exp] 201 / 2e-65 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.013G011200 [exp] 169 / 1e-52 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.005G020900 [exp] 168 / 2e-52 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.002G200500 [exp] 129 / 4e-37 AT3G05700 152 / 7e-46 Drought-responsive family protein (.1) Potri.019G027300 [exp] 116 / 1e-33 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.014G125500 [exp] 117 / 2e-32 AT3G05700 148 / 2e-44 Drought-responsive family protein (.1) Potri.011G057200 [exp] 84 / 1e-19 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2) Potri.012G086500 [exp] 79 / 4e-18 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10037819 pacid=23167060 polypeptide=Lus10037819 locus=Lus10037819.g ID=Lus10037819.BGIv1.0 annot-version=v1.0 ATGGCTTCCGACCCCTGGGGCTCTCGCTTCTCCACTTCTTCATCTCGACGTCACCAAGTTCGGCCTGGTTCAGATCTATTTGAAGATGAAAGGGAATTGG AAGATGATCCCAAAGCCGAGTTCTTGTGTCCCTTTTGTGCCGAGGATTTTGATGTTCTGGGACTTTGTTGTCATATGGACGTGGAGCATCCTGTTGAGAC AAAAAATGGGGTGTGCCCTGTCTGCGCTAAAAGAGTGGGATTGGATATCGTTGGCCATATTACTACGCAGCATCAGAGTTTATTTAAGATATCCCGTAAG AGACGATTGCGTAAAGGTGGACCTAACTCGACATTCTCTTCACTATTGAAGAAAGAACTCCGCGATGGCAGCTTACAGTCACTCCTCGGGGGTTCTTCCT ATGTCTCCAGTACAGAGCCTGATCCGCTGCTTTCATCATTCATGTTTAGTCCGTCTGGACATGATGAGCCTCCGAGTGTTCTCCGTGCTGCTTCAGTTGA AACAAGTCCAGCAGTGGATGATAGCATGATCAATGCATCTGTAATTAGGGAAATTGAGCCATCAGCGCCTGTATCAGAGAAGGAAACAGAAGAGAAGTCT CGGAGGTGCGAGTTTGTTCGAGGACTGGTGCTATCCACCATTCTTGATGAGTTATGA
AA sequence Show only first row Show all	>Lus10037819 pacid=23167060 polypeptide=Lus10037819 locus=Lus10037819.g ID=Lus10037819.BGIv1.0 annot-version=v1.0 MASDPWGSRFSTSSSRRHQVRPGSDLFEDERELEDDPKAEFLCPFCAEDFDVLGLCCHMDVEHPVETKNGVCPVCAKRVGLDIVGHITTQHQSLFKISRK RRLRKGGPNSTFSSLLKKELRDGSLQSLLGGSSYVSSTEPDPLLSSFMFSPSGHDEPPSVLRAASVETSPAVDDSMINASVIREIEPSAPVSEKETEEKS RRCEFVRGLVLSTILDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	0	1
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	1.0	0.9414
AT4G16100			Protein of unknown function (D...		Lus10037717 [exp]	2.0	0.9147
AT1G21840		UREF	urease accessory protein F (.1...		Lus10027319 [exp]	4.9	0.8725
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	12.5	0.8557
AT1G27000			Protein of unknown function (D...		Lus10036718 [exp]	13.4	0.8749
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10020016 [exp]	13.8	0.8597
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	14.1	0.8796
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	15.5	0.8446
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	18.4	0.8369
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10012102 [exp]	18.5	0.8112

Compare expression of checked genes

Lus10037819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.