Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17205 1044 / 0 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 156 / 2e-38 UPL7 ubiquitin-protein ligase 7 (.1.2) AT1G70320 102 / 1e-21 UPL2 ubiquitin-protein ligase 2 (.1) AT1G55860 102 / 1e-21 UPL1 ubiquitin-protein ligase 1 (.1.2) AT5G02880 85 / 2e-16 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 84 / 6e-16 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT4G12570 64 / 5e-10 UPL5 ubiquitin protein ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017098 [exp] 1311 / 0 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10008636 [exp] 217 / 8e-58 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10035589 [exp] 160 / 1e-39 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10032830 [exp] 102 / 2e-21 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 101 / 2e-21 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 97 / 6e-20 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10027841 [exp] 85 / 2e-16 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10019908 [exp] 75 / 2e-13 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10005068 [exp] 70 / 9e-12 AT4G38600 2305 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G150000 [exp] 1144 / 0 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 1116 / 0 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G096500 [exp] 150 / 8e-37 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.001G368600 [exp] 102 / 9e-22 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.002G110500 [exp] 102 / 1e-21 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 100 / 4e-21 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.004G174700 [exp] 84 / 5e-16 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.009G134300 [exp] 84 / 5e-16 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.016G085200 [exp] 81 / 3e-15 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.006G132000 [exp] 79 / 1e-14 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10037820 pacid=23167026 polypeptide=Lus10037820 locus=Lus10037820.g ID=Lus10037820.BGIv1.0 annot-version=v1.0 ATGTTCTTCAGCGGTGATCCAACGACTCGCAAGCGAGTCGACTTGGGAGGCCGGAGTTCTAAAGAGAGAGACAGGAAGAAGCTTCTGGAGGAGACGAGAT TGGAGCGCAACCGCAGATTGTGGCAGCGTCAACAGATTGCAGCTGCGATCACTATTCAGAAATGCTTCAGAGGTAGGAAGGCTGTGAAAGCTGAGCAGGC TAAGGTGCGGGAACAGTTTCTCTTGAAGTACGGCAGACATTGTCAAAATGCAGACAGGCATTGTTTGTGTCCAGAGTCCGATTACCTTTATCAGCTGTTC TTTTTCTTCGATCCTCGAAATAATGGTGATCTTGTGGTTCTCGTGGAGACCTGTAGATTGATCCTGAATGTTGTTGGACATACGGGTGATGTTGTGAGCC TTTTTTCTGGTATGGATTATCCAACAATGCATTCTATGGTGGATCATAGAGTGAAGCGCCTTGCTTATATCTGTGTTCTTTCTCTACATCGAAACAGATC ACATTTTAGAAACCGATTGCTACTACTAGAACCAGAATCAGACAAGCAAGCTACAATAGTGCTTGAAGCAGTTGCCACTTTGATAGATCCCAAACTTCCA TGGGCCTGCAAGACTGTTAGTTATCTTTTGCAACGGAATGTATTTGCTCTATTCCGGGAAATCGTTCTTATTGCGAAAGAGACTTCTGATTTTATATCGA ATGCTGCGCAGGAAGATGTGAAGACCTCCAGCAGCACTTGGAAAGCTTCTGGACTGGAACACATCCTTGGGCTCTTGATTTCTCACACTGGCCAGAATCC GTGTAGCTGTCCTGATGTTGATCCACTGTGGAGCTTTACCTCACAAATGCTTACAATTCCTTTCGTCTGGCAGCTTTTCCCAAGTTTAAAACAGGTTCTC TCAAATCAGGGTCTCAGTCAGCATTACATTCATCAGATGTCATTGTATCTGCCGAACTATGTCAATGTGCTGCCTAGTGATGTTTCTCCGGAGTATCCTG GGTATGCATGTCTGCTTGGAAACATTGTAGAAGCAGCTGGAGTTACATTATTGCAGCCTGCTTGTCCATTTGAGATGGCTGTTGACCTTGCAACTGTCGC AACGTCCCTGTTGGAAGCTTTGCCTGCCATAAAATTGTCAAGCCAGAAAGCTATAGAAGATTCAGCTATGGTCGATGATGATGGGAATTCTCCTGACGAG AGGCAAACAGTTTTGGATAAAGATTTGGAGCGGCAGATAATAAGTGCTATAGATTCACGCTTCCTGCTGCAATTGATTAATGTCTTATTTGAAGGGATTT CATCAACCAGTGGACAGGATGATAGAGCTATTGGTGCTGCATGTGCTTTTCTGCATGTCACATTCAACGTTTTGCCTCTTGAGCGCATCATGACTGTTCT GGCTTATAGGACTGAACTTGTTCGAGTTCTTTGGGAGTTCATGAAAGACTGTCATGACAATCAAAGATGGTCATCAGTATCTGAGCATCTGCCACTCTTA CCAGGCGATGCACCTGGTTGGTTGTTACCTTTGGCTGTTTTCTGTCCTGTATATAAGCATATGCTTATGATAGTTGATAATGAGGAGTTTTATGAACAAG AAAAACCACTATCACTGGGGGATATCCGATACTTGATTATTATCCTCAGACAGGCATTATGGGAGCTACTGTGGGTTAATTCTATGGGTCACAATGCTTC ATCAAAACCTGTTATGTACACAAGTTCCTCTACTTACAAGCAGAATCCTATAGAGTCTATTAAACACAGAGTTAGTATTGTGGCCTCTGAGTTGCTCTCA CAGTTGCAAGATTGGAACAACAGAAGAGAATTCACCCCACCAAGTGATTTTCATGCAGATGGTGTGGATGATTACTTTATTTCTCAGGCTGTAACTGATG GAACTAAAGCAAATGAAATACTGAAGCTAGCTCCGTTTTTGATTCCTTTCACAAGCAGGGTCAAGATATTTAATTCACAACTAACGACAATCAAGCAAAG ACATGGTCCTCAAGGTGTCTTTGCGAGAAACAGATTTAGAATAAGACGAGACCATATTCTGGAAGATGCTTATAATCAAATGAGTGCACTATCAGAAGAG GATCTACGGGGATTGATTCGTGTAGCATTTGTCAACGAGCTTGGAGTGGAGGAAGCTGGTATTGATGGTGGTGGAATTTTTAAAGATTTCATGGAGAACA TAACTCGAGCTGCATTTGACGTGCAGTATGGTTTATTTAAGGAAACAGTTGACCATTTACTATATCCAAATCCTGGATCGGGCATGATACATGAGCAACA TCTTCAGTTTTTCCATTTTCTTGGGACTCTTCTTGCTAAGGCTATGTTTGAAGGTATTCTAGTTGATATTCCATTTGCGACATTCTTCTTGAGCAAGCTG AAGCAAAAGTTCAACTATCTCAATGATTTGCCTTCTCTAGATCCAGAATTGTATCGCCACCTTATATTCCTCAAGCTCTTGATATCAGGTTCGCTAGAAA GTATGGATGTTGATGATCTTCGCACTCACACCAATTATGCTGGTGGTTATCACAAAGAGCATTATGTTATCGAGATGTTCTGGGATGTTCTCAAAGGCTT TTCGTTAGAGAATCAAAAGAAATTTCTGAAGTTTGTGACCGGCTGTTCTCGGGGACCGTTGCTTGGTTTCAAATACCTAGAACCCATGTTTTGCATCCAA AGGGCTGGTGGTAGCGCCACGGAGGAAGCACTTGACCGGCTTCCGACATCCGCCACTTGCATGAATCTTCTCAAACTTCCTCCTTACAGAAGCAAGGAGC AAATGGAAGCGAAATTGATGTATGCGATAAACGCGGAAGCTGGTTTCGATCTGAGCTGA
AA sequence Show only first row Show all	>Lus10037820 pacid=23167026 polypeptide=Lus10037820 locus=Lus10037820.g ID=Lus10037820.BGIv1.0 annot-version=v1.0 MFFSGDPTTRKRVDLGGRSSKERDRKKLLEETRLERNRRLWQRQQIAAAITIQKCFRGRKAVKAEQAKVREQFLLKYGRHCQNADRHCLCPESDYLYQLF FFFDPRNNGDLVVLVETCRLILNVVGHTGDVVSLFSGMDYPTMHSMVDHRVKRLAYICVLSLHRNRSHFRNRLLLLEPESDKQATIVLEAVATLIDPKLP WACKTVSYLLQRNVFALFREIVLIAKETSDFISNAAQEDVKTSSSTWKASGLEHILGLLISHTGQNPCSCPDVDPLWSFTSQMLTIPFVWQLFPSLKQVL SNQGLSQHYIHQMSLYLPNYVNVLPSDVSPEYPGYACLLGNIVEAAGVTLLQPACPFEMAVDLATVATSLLEALPAIKLSSQKAIEDSAMVDDDGNSPDE RQTVLDKDLERQIISAIDSRFLLQLINVLFEGISSTSGQDDRAIGAACAFLHVTFNVLPLERIMTVLAYRTELVRVLWEFMKDCHDNQRWSSVSEHLPLL PGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLGDIRYLIIILRQALWELLWVNSMGHNASSKPVMYTSSSTYKQNPIESIKHRVSIVASELLS QLQDWNNRREFTPPSDFHADGVDDYFISQAVTDGTKANEILKLAPFLIPFTSRVKIFNSQLTTIKQRHGPQGVFARNRFRIRRDHILEDAYNQMSALSEE DLRGLIRVAFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETVDHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDIPFATFFLSKL KQKFNYLNDLPSLDPELYRHLIFLKLLISGSLESMDVDDLRTHTNYAGGYHKEHYVIEMFWDVLKGFSLENQKKFLKFVTGCSRGPLLGFKYLEPMFCIQ RAGGSATEEALDRLPTSATCMNLLKLPPYRSKEQMEAKLMYAINAEAGFDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	0	1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	1.0	0.9559
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	2.0	0.9054
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	2.0	0.9228
AT3G06670			binding (.1.2)		Lus10037742 [exp]	3.9	0.8956
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	3.9	0.9087
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	4.5	0.8570
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	4.9	0.8880
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	5.4	0.8172
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	5.7	0.8416
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	6.2	0.8525

Compare expression of checked genes

Lus10037820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.