Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17210 170 / 2e-56 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) AT5G22580 82 / 2e-21 Stress responsive A/B Barrel Domain (.1) AT2G31670 40 / 7e-05 Stress responsive alpha-beta barrel domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000094 [exp] 210 / 4e-72 AT3G17210 162 / 6e-53 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Lus10017101 [exp] 86 / 2e-21 AT5G30490 189 / 2e-59 unknown protein Lus10020555 [exp] 67 / 2e-15 AT5G22580 133 / 9e-42 Stress responsive A/B Barrel Domain (.1) Lus10009407 [exp] 62 / 1e-13 AT5G22580 122 / 2e-37 Stress responsive A/B Barrel Domain (.1) Lus10034659 [exp] 39 / 0.0004 AT2G31670 264 / 2e-89 Stress responsive alpha-beta barrel domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037500 [exp] 171 / 1e-56 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037200 [exp] 170 / 8e-56 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150900 [exp] 142 / 3e-45 AT3G17210 146 / 8e-47 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151000 [exp] 135 / 1e-42 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150500 [exp] 98 / 8e-28 AT3G17210 100 / 5e-29 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151200 [exp] 94 / 3e-26 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150800 [exp] 94 / 3e-26 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.004G187500 [exp] 76 / 3e-19 AT5G22580 134 / 3e-42 Stress responsive A/B Barrel Domain (.1) Potri.010G150700 [exp] 76 / 5e-19 AT3G17210 86 / 4e-23 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.009G148100 [exp] 74 / 3e-18 AT5G22580 118 / 7e-36 Stress responsive A/B Barrel Domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [flax] [poplar] Dim_A_B_barrel PF07876 [flax] [poplar] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Lus10037823 pacid=23167051 polypeptide=Lus10037823 locus=Lus10037823.g ID=Lus10037823.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGAAAGGAGAAGTGAAGCACGTCCTGCTCGCGAAATTCAAACCAGAGATTTCAGGAGAGGAGATCGAAAAGCTCATCAAGGATTACGCCA ATCTCGTCACTCTCATCGAACCTATGAAGGCTTTCCACTGGGGAACGGATGTGAGCATCGAGAATATGCACCAGGGATTCACTCACATATTCGTCTCCAC CTTCGAGAGCACTGAAGGGATCGCTGAGTATGTAGCTCATCCTGTTCACGTAGAGTTCGCCAATTTGTTCTTGGCTGCCCTTGACAAAGTACTGGTTTTC GATTACAAGCCCACCTCCGTTAAGTGA
AA sequence Show only first row Show all	>Lus10037823 pacid=23167051 polypeptide=Lus10037823 locus=Lus10037823.g ID=Lus10037823.BGIv1.0 annot-version=v1.0 MEEGKGEVKHVLLAKFKPEISGEEIEKLIKDYANLVTLIEPMKAFHWGTDVSIENMHQGFTHIFVSTFESTEGIAEYVAHPVHVEFANLFLAALDKVLVF DYKPTSVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Lus10037823 [exp]	0	1
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	5.1	0.8737
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031896 [exp]	5.7	0.8474
AT1G76860			Small nuclear ribonucleoprotei...		Lus10011293 [exp]	6.3	0.8558
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10029633 [exp]	6.5	0.8500
AT3G05070			unknown protein		Lus10026367 [exp]	6.5	0.8658
AT5G07960			unknown protein		Lus10034695 [exp]	6.5	0.8535
AT1G05205			unknown protein		Lus10039669 [exp]	6.8	0.8674
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	8.2	0.8620
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10021405 [exp]	12.6	0.8404
AT5G07960			unknown protein		Lus10021623 [exp]	14.5	0.8397

Compare expression of checked genes

Lus10037823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.