Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G30490 172 / 2e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017101 [exp] 379 / 4e-133 AT5G30490 189 / 2e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G151300 [exp] 278 / 4e-93 AT5G30490 181 / 1e-55 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07572 [flax] [poplar] BCNT Bucentaur or craniofacial development
Representative CDS sequence Show only first row Show all	>Lus10037824 pacid=23167265 polypeptide=Lus10037824 locus=Lus10037824.g ID=Lus10037824.BGIv1.0 annot-version=v1.0 ATGAGTTCGCATGTGGATTCCATCGAAGATGTTAATCCAGCTTCAACTTCTGAGCCCAAACCTCAAGAAAGTGGTGTGGGAGCTCGCGTGGAAGCTCTGT GGGAGCAAATGAATAAAGGGTGCAATAAGAATAACAAGGCAGAATCAAAGAAGCGTACTAGTTCAAACATGACGAGCTCGCAGAAGCCAAATGATAATTG GATGGCTTATCTGGGTCTAAAACCAAAGATCAATGGACTTCCTGAAAAGGATTCACAACAGAATGGCTGTAGCAGTCAGCAGCCTAAGGAAACAGGATCT TCCCCAAACAAGTCTAGTGCAACTGTGAATCAAACTTCACAAAAGAAGTCTGATAGCTGGAAGAATTACCTAGGCCTGGGAACAAAGCAGGCACAATCAT CAGGAAACGATGCATCACTGGAGAGGCGTAATGGTTTGCATACCAGCACCAGTGATGAGGCCAAGAAGCTTGCTGCTGCTGCTCTGTCTGCAGTTAAGGA TGCTGCCGCTGCTGCAGCACTCAGGGGAAAGGTCGAGATAACAGAGGTACGGGATTTTGCTGGCCGGGACATTGAGGTTAAGAAGCTTGTCGATGCAGAG TCGAAAGAGGCAGCAGCTGAAAAGGGAAAATCTGCTGCACCTTCGGCGGTGGATGCTGTACTGGAACAGATTAAGAAGAAACAAAAACTGAGTGTGCTGG ACAAGACGAAGAAAGACTGGGGAGAATTTAAGGATGAGAATAAGGGGGTGGAAGATGAGTTAGAAACGTACAAGAAGAGTTCAAACCAATATCTGGACAG AGTATCTTTCTTGGAACGCACAGACTACAGGGAATTCGAGAGGGAAAGAGACGCTAGGCTAGCAATGCAATCCAGGAGACGAACGGACATGCGTGAGGAT TAA
AA sequence Show only first row Show all	>Lus10037824 pacid=23167265 polypeptide=Lus10037824 locus=Lus10037824.g ID=Lus10037824.BGIv1.0 annot-version=v1.0 MSSHVDSIEDVNPASTSEPKPQESGVGARVEALWEQMNKGCNKNNKAESKKRTSSNMTSSQKPNDNWMAYLGLKPKINGLPEKDSQQNGCSSQQPKETGS SPNKSSATVNQTSQKKSDSWKNYLGLGTKQAQSSGNDASLERRNGLHTSTSDEAKKLAAAALSAVKDAAAAAALRGKVEITEVRDFAGRDIEVKKLVDAE SKEAAAEKGKSAAPSAVDAVLEQIKKKQKLSVLDKTKKDWGEFKDENKGVEDELETYKKSSNQYLDRVSFLERTDYREFERERDARLAMQSRRRTDMRED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G30490			unknown protein		Lus10037824 [exp]	0	1
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	2.0	0.9202
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	4.5	0.9111
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	6.0	0.9012
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	6.5	0.8986
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	7.3	0.8950
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	8.8	0.8978
AT4G22000			unknown protein		Lus10008487 [exp]	9.5	0.8987
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	10.2	0.8987
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	12.6	0.8978
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	13.2	0.8658

Compare expression of checked genes

Lus10037824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.