Plant FIBer expression Database

Lus10037826 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32760 152 / 5e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022576
[exp]
271 / 3e-91 AT2G32760 384 / 4e-133 unknown protein
Lus10016662
[exp]
255 / 6e-85 AT2G32760 388 / 1e-134 unknown protein
Lus10022575
[exp]
100 / 8e-27 AT2G32760 111 / 5e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G056800
[exp]
202 / 1e-64 AT2G32760 368 / 5e-127 unknown protein
PFAM info
Representative CDS sequence
>Lus10037826 pacid=23167073 polypeptide=Lus10037826 locus=Lus10037826.g ID=Lus10037826.BGIv1.0 annot-version=v1.0
ATGGAGAGTTTGTCACTACGCTCACAGGGAGCAGCAGAGAAACCTAAGAAGGAAGAAGCAAGGCTTGGTGCAGAAGTCAGATCCCTTTTGGTTGCAGGAA
CTGCTCTTTCTGCGGCTAATAAGCAACTGAAGTTAATTTTTGAAGAATACTTAAGGAACTCGGGTGGATCTAGGCTTCTTAATCCGGGATCCTTGACAAT
TTTAGGTCTGCATTTGACTATGCTTCCGTTTACAAAGATGGCTGTGTCACTAGTATCCTCATACTTAAAAGTTCCCACCCGTTACCCTGTTCGGTTGGGT
GGTTCTCATTCTTATATCATTGATCCAGCACCTTCTACTGAGCCAACATCATTGCCATCGGGGTCTTCAAGTACAACATCTCTCAGCAATGTGAAGCCAG
TTGAATTCCCGCTTTTCTTAGATGGTCAAGATACAATAAGAGCAGCTTATGCTGTATTCCTATTAAACAAGGATTCGGAGCAGCTGTTAAATTATATCGG
AGTGAAGAGTCTAGGGCCACGTCATGTATTGGCTAATATGAAGGAGCTTGTGAGGACAGTTCAGTCTGCAGATTTTCTAGAATAG
AA sequence
>Lus10037826 pacid=23167073 polypeptide=Lus10037826 locus=Lus10037826.g ID=Lus10037826.BGIv1.0 annot-version=v1.0
MESLSLRSQGAAEKPKKEEARLGAEVRSLLVAGTALSAANKQLKLIFEEYLRNSGGSRLLNPGSLTILGLHLTMLPFTKMAVSLVSSYLKVPTRYPVRLG
GSHSYIIDPAPSTEPTSLPSGSSSTTSLSNVKPVEFPLFLDGQDTIRAAYAVFLLNKDSEQLLNYIGVKSLGPRHVLANMKELVRTVQSADFLE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G32760 unknown protein Lus10037826
[exp]
0 1
AT5G67170 SEC-C motif-containing protein... Lus10006255
[exp]
1.4 0.9160
AT2G04865 Aminotransferase-like, plant m... Lus10006393
[exp]
2.6 0.8760
AT2G31130 unknown protein Lus10000990
[exp]
3.5 0.8769
AT2G19260 RING/FYVE/PHD zinc finger supe... Lus10020162
[exp]
5.1 0.9004
AT5G03455 ACR2, ARATH;CDC... ARSENATE REDUCTASE 2, Rhodanes... Lus10023923
[exp]
6.6 0.8695
AT1G01750 ADF11 actin depolymerizing factor 11... Lus10008489
[exp]
7.5 0.8977
AT1G48635 PEX3-2, PEX3 PEROXIN 3-2, peroxin 3 (.1.2) Lus10018002
[exp]
10.2 0.8830
Lus10033298
[exp]
10.5 0.8697
AT1G57540 unknown protein Lus10024000
[exp]
10.8 0.8319
Lus10019353
[exp]
17.7 0.8669

Lus10037826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.