Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04850 536 / 0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G48690 206 / 2e-63 unknown protein AT2G01650 54 / 9e-08 PUX2 plant UBX domain-containing protein 2 (.1) AT3G20630 47 / 2e-05 PER1, ATUBP14, TTN6, UBP14 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017103 [exp] 640 / 0 AT1G04850 573 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10038183 [exp] 265 / 7e-80 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2) Lus10021798 [exp] 50 / 2e-06 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10034612 [exp] 50 / 2e-06 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10002262 [exp] 49 / 7e-06 AT5G35690 585 / 0.0 unknown protein Lus10037870 [exp] 45 / 0.0001 AT3G20630 1269 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Lus10000922 [exp] 45 / 0.0001 AT5G35690 575 / 0.0 unknown protein Lus10038564 [exp] 44 / 0.0003 AT3G20630 1142 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316400 [exp] 557 / 0 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.017G056900 [exp] 550 / 0 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.002G244500 [exp] 278 / 2e-91 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.008G133700 [exp] 50 / 2e-06 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1) Potri.014G160400 [exp] 44 / 0.0001 AT5G35690 440 / 2e-146 unknown protein Potri.011G125800 [exp] 42 / 0.0005 AT3G20630 1258 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09409 [flax] [poplar] PUB PUB domain CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10037827 pacid=23167342 polypeptide=Lus10037827 locus=Lus10037827.g ID=Lus10037827.BGIv1.0 annot-version=v1.0 ATGGCAGGAGTTTCGCTCAAGTGCGGAGACTGCGGAGCCCTGTTGAAGTCCGTAGAGGAAGCTCAGGAGCACGCCGAACTGACTTCTCACTCCAATTTCT CCGAGTCGACAGAGGCTGTACTTAATCTCGTCTGCACTGTTTGTGGAAAGCCCTGCCGATCGAGAACGGAAACCGATTTGCACACAAAGCGAACTGGTCA TACTGAGTTTGTAGACAAGACTGAGGAAGCTACAAAACCTATAAGTTTAGAAGCACCAAAGGCTCCGATGGACGTTGATGAGCCGATTGGTACCAGCACT AGTGGGCAGCCTGAAGAAATGGTTGCTCCAGAAGTTGACCCAAAGCTCCTCGAAGAACTGGAAGGAATGGGTTTCCCAAAGGCACGGGCGACCAGGGCAC TTCATTTTACTGGCAATAGCAGTGTCGAGGCTGCTGTGAACTGGGTGGTTGAGCATGAGAATGACCCAGACGTTGATGAGATGCCCCTGGTACCAGCAAA CACCAAGGAAGATGCTTCTAAGACTACTCTTACGCCAGAAGAAGTCAAACAGAAAGCAGCAGAATTGAGGGAGCGTGCTCGTAAAAAGAAAGAGGAGGAG GAGAAGAGAATGGAAAGAGAAAGGGAAAAGGAGAGGATCCGAGTTGGTAAGGAACTCTTGGAGGCCAAACGGATTGAAGAAGACAATGAAAGAAAACGTA TAATTGCCTTGCGGAAGGCTGAGAAAGAAGAAGAGAGGAGGGCTAAGGAAAAGATTCGTCAGAAGCTGGAGGAAGATAAGGCAGAAAGAAGAAGGAAGCT TGGGTTACCCCCACAAGATCCAGCCACTGCGAAACCTGCAGCACCTGCAGCGCCTGTTGAGGAAAAAAAGAGCTCGTTACCTATCAGGCCAGCCACAAAG GCAGAACAAATGAGAGAATGCTTGAGAGCAATGAAGCAAACTTATAAGGATGAGGATGCTAAAGTGAAGAGAGCATTCCAGACTCTGCTAACGTACATAG GAAATGTAGCTAAAACGCCAAGCGAGGAGAAGTTCAGAAAAATCAGGCTGAGTAACCAAACTTTCCAGGATAGAGTTGGTTCTCTGGAAGGAGGGATCCA GTTGTTGGAGCTGTGCGGATTCGAGAAGATAGAAGGAGGTGAGTTCCTTTTCCTGCCAAGGGAAAAGGTGGAAATGGCTGTGCTCAACTCTGCCGGATCT GAGCTCAACTCTGCCATAAACAACCCCTTCTTTGGAGTTCTCTAG
AA sequence Show only first row Show all	>Lus10037827 pacid=23167342 polypeptide=Lus10037827 locus=Lus10037827.g ID=Lus10037827.BGIv1.0 annot-version=v1.0 MAGVSLKCGDCGALLKSVEEAQEHAELTSHSNFSESTEAVLNLVCTVCGKPCRSRTETDLHTKRTGHTEFVDKTEEATKPISLEAPKAPMDVDEPIGTST SGQPEEMVAPEVDPKLLEELEGMGFPKARATRALHFTGNSSVEAAVNWVVEHENDPDVDEMPLVPANTKEDASKTTLTPEEVKQKAAELRERARKKKEEE EKRMEREREKERIRVGKELLEAKRIEEDNERKRIIALRKAEKEEERRAKEKIRQKLEEDKAERRRKLGLPPQDPATAKPAAPAAPVEEKKSSLPIRPATK AEQMRECLRAMKQTYKDEDAKVKRAFQTLLTYIGNVAKTPSEEKFRKIRLSNQTFQDRVGSLEGGIQLLELCGFEKIEGGEFLFLPREKVEMAVLNSAGS ELNSAINNPFFGVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10037827 [exp]	0	1
AT5G09300			Thiamin diphosphate-binding fo...		Lus10020895 [exp]	1.7	0.9349
AT4G21105			cytochrome-c oxidases;electron...		Lus10006275 [exp]	3.9	0.9385
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10032420 [exp]	6.0	0.9292
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	6.2	0.9383
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	8.7	0.9346
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	8.9	0.9162
AT1G42960			unknown protein		Lus10012242 [exp]	9.4	0.9286
AT3G58180			ARM repeat superfamily protein...		Lus10007032 [exp]	9.5	0.9093
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	11.2	0.9148
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	11.8	0.9309

Compare expression of checked genes

Lus10037827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.