Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13730 475 / 4e-166 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 468 / 5e-163 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G28550 90 / 2e-19 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G30710 87 / 2e-18 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 86 / 6e-18 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G41940 77 / 1e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G54780 75 / 3e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 74 / 4e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 73 / 1e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 72 / 3e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017104 [exp] 697 / 0 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10022905 [exp] 93 / 5e-20 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 92 / 5e-20 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 83 / 9e-17 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 82 / 1e-16 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 81 / 1e-16 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10011159 [exp] 82 / 2e-16 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10043064 [exp] 80 / 9e-16 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10033232 [exp] 76 / 1e-14 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316700 [exp] 530 / 0 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 530 / 0 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G131300 [exp] 346 / 3e-115 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.006G069300 [exp] 340 / 1e-112 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.005G227400 [exp] 95 / 5e-21 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G134200 [exp] 86 / 9e-18 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G419100 [exp] 83 / 5e-17 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 81 / 4e-16 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.018G127500 [exp] 78 / 5e-15 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.017G023200 [exp] 75 / 3e-14 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10037829 pacid=23167154 polypeptide=Lus10037829 locus=Lus10037829.g ID=Lus10037829.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAGAACGTGCCTGATTGGCTTAACAGCTCTCTTTGGTCCACTGCTCCTTCCTCTCCTCCCTCCGACGATCTCTCCCAACCCCACCCCTCCT CCTCCTCCGCCAATTCCATCTCGGCAGCCATTCCCCCCGCTCCGATGACCAGCGATGCTAATTTTCAACCTCCGATCCTCGTCCGACCTACGAGGGAAGA ACAACCGCCGCCTCGCTCGCAGAAACCAGAGATTAAGGATAAGAATTCCAAGAGTATTGTTAGTACTAATTCTAATAGCAGTAGCAATAGCAGTATTCAT ATAGATGAAGATCGCGATGACGAGAATGTTGCCTCTGCTGCTGGCCCTTCTGCGGAGGATATAACGAAGCAGGCTAAGTTATCGACCGAGGCGATTGTCG AAGAAGGTGGTGAATTTGAAAGAATTGAGGAAGATTGCTTCCCAGGGCTTTTGTTGGGATATTTACCTCCCGAGCGTTCCCAGTGGTCGTCTGAATTGGC TAAGAAGAGGCCCCAATACAAGAATTTCAAAGATGAGCTGCTGATGAATCCTTCAGAAATCACAAGGAAGTTGGAGAAGCCCATTGACGAGGATTCAAAG CTTGAAAATTGTTGTATGCTCTCAAGATCAGAAATCAATCATGATGAACATCCTTTGAGCCTAGGGAAAACCAGCATCTGGAATAAATACTTCCAGGACT CCGAGATTATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGATCTGCATTTCTTCTGCGGAGATTCATCGTTTGCAAAATCAAATCAGGAATC TTTGAAAAGCATATTAATTGTATTTGCCAAGTTAAATCCTGGCATCAGATATGTCCAAGGGATGAATGAGATTGTGGCCCCTCTATACTACGTATTCAAA AATGACCCAGATGAGGAAATGGCATCATGTGCCGAAGCAGACACGTTCTTTTGTTTCGTTGAGCTGTTAAGTGGATTCCGTGACAATTTCTGCCAGCAGC TGGACAATAGTGTTGTTGGAATCCGTTCAACAATTACAAAGCTGTCACAGCTTTTGAAAGAACATGATGAAGAACTTTGGCGCCACCTCGAGATCACAAC CAAGGTGAACCCGCAATTTTACGCATTTAGGTGGATCACACTCCTGTTGACGCAAGAATTCAACTTTGCAGATAGTCTTCATATTTGGGACACGCTCCTC AGCGACCCTCAGGGTCCCCAGGAGACTTTACTTAGGATCTGTTGTGCGATGCTAATACTGATACGAAGGAGGCTCCTAGCAGGGGATTTCACATCTATTC TGAAACTTCTGCAGAACTACCCACCCACAAACATCAGCCATTTGCTTTACGTTGCAAACAAATTGCGCCCTCCTCTTCCCTCTTGCTGA
AA sequence Show only first row Show all	>Lus10037829 pacid=23167154 polypeptide=Lus10037829 locus=Lus10037829.g ID=Lus10037829.BGIv1.0 annot-version=v1.0 MVKKNVPDWLNSSLWSTAPSSPPSDDLSQPHPSSSSANSISAAIPPAPMTSDANFQPPILVRPTREEQPPPRSQKPEIKDKNSKSIVSTNSNSSSNSSIH IDEDRDDENVASAAGPSAEDITKQAKLSTEAIVEEGGEFERIEEDCFPGLLLGYLPPERSQWSSELAKKRPQYKNFKDELLMNPSEITRKLEKPIDEDSK LENCCMLSRSEINHDEHPLSLGKTSIWNKYFQDSEIIEQIDRDVKRTHPDLHFFCGDSSFAKSNQESLKSILIVFAKLNPGIRYVQGMNEIVAPLYYVFK NDPDEEMASCAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLL SDPQGPQETLLRICCAMLILIRRRLLAGDFTSILKLLQNYPPTNISHLLYVANKLRPPLPSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	0	1
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	1.0	0.9164
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	2.4	0.9043
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10041409 [exp]	6.0	0.8971
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10017366 [exp]	8.2	0.8933
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10007914 [exp]	9.7	0.8584
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10040492 [exp]	12.1	0.8488
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	13.7	0.8842
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	14.1	0.8980
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	14.5	0.9019
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	15.6	0.8976

Compare expression of checked genes

Lus10037829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.