Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04910 846 / 0 O-fucosyltransferase family protein (.1) AT1G22460 283 / 1e-88 O-fucosyltransferase family protein (.1) AT1G14020 278 / 2e-87 O-fucosyltransferase family protein (.1) AT4G24530 277 / 6e-87 O-fucosyltransferase family protein (.1) AT2G03280 275 / 2e-86 O-fucosyltransferase family protein (.1.2) AT5G35570 278 / 7e-86 O-fucosyltransferase family protein (.1) AT2G37980 275 / 5e-85 O-fucosyltransferase family protein (.1) AT5G15740 270 / 2e-84 RRT1 O-fucosyltransferase family protein (.1) AT5G01100 273 / 3e-84 O-fucosyltransferase family protein (.1) AT5G65470 269 / 7e-84 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032603 [exp] 897 / 0 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10017105 [exp] 886 / 0 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030093 [exp] 387 / 2e-131 AT1G04910 384 / 2e-130 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 288 / 4e-91 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 286 / 4e-90 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 283 / 3e-89 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 281 / 2e-88 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 276 / 2e-86 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 275 / 7e-86 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316800 [exp] 855 / 0 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G057300 [exp] 836 / 0 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 288 / 3e-90 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 283 / 2e-89 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 282 / 5e-89 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 282 / 8e-89 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 282 / 9e-89 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 282 / 1e-88 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 281 / 3e-88 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 279 / 5e-88 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037830 pacid=23167382 polypeptide=Lus10037830 locus=Lus10037830.g ID=Lus10037830.BGIv1.0 annot-version=v1.0 ATGAGGAGGCATCAACACCATCACAGCAGGTCGCACTGGAAGCAGGGAGCCGGAGCACTGAGGGTAACGGTGGCGAAGTTATCGATCGGGGGTCTAGTGC TCTTGATCTGCACGCTTTCTTTCCTCTTTTCCGCTACACATACTAGGAACAAAGGATCCACTGGTCCTTCAGAGATCAATCTTGACCAGCTCTGGGAATC TGCTAATTCCGGTAGCTGGAGACCGTCATCAGCTCCAAGATCTCATTGGCCTCCTCCTCCGAAAGAGACTAATGGATATCTGCGAGTTCGTTGTAATGGT GGTCTGAATCAGCAGAGGAGTGCGATCTGCAATGCCGTTCTTGCTGCCAGAATTATGAATGCTACACTTGTGCTTCCTGAATTAGATGCAAACTCCTTTT GGCATGATGACAGTGGGTTCCATGGAATTTACGACGTGGAGCATTTTATTCAGTCACTGAGGTATGACGTACGGATTGTAGAAAGCATTCCAGAAATCCA TAAAAATGGAAGAACGAAGAAGATAAAGGCCTTCCAGCTGCGCCCTGAAAGAGATGCACCTATTAGTTGGTACACAACAGAGGCACTGCAGAAAATGAAG CAACATGGAGCAATATATTTAACTCCTTTTTCACACCGTTTAGCTGAGGAAATTGATAACCCCGAGTACCAGCGACTCAGATGCAGGGTTAACTATCATG CTTTAAGATTTAAACCTCATATTATGAAGTTGAGTGAATCAATAGTCGAGAAACTACGCACAGAAGGTCACTTCATGGCAATACACCTTCGATTTGAGAT GGACATGCTCGCATTTGCAGGGTGCTTTGACATATTCAGTCCCAAAGAACAAGTATTATTGAAGAAGTATCGTGACGAAAATTTTGCAAAGAAGAAGCTT GTGTATAATGAAAGGAGAGCGATTGGAAAGTGCCCACTTACTCCAGCAGAGGTTGGACTTATCCTACGAGCTATGGGGTTTGACAATTCAACCAGAATAT ATTTAGCCGCGGGTGAATTGTTTGGGGGAGAACGATTTATGAAGCCTTTCAGGTCTCTGTTTCCCCGTCTGGAAAATCACAGTTCTGTAGATGTTTCAGA GGAGCTGAGTGGAAACAGCCAGGGATTACTGGGTTCCGCAGTGGATTACATGGTTTGTCTTCTTGCTGACATCTTCATGCCAACGTATGATGGACCAAGT AACTTTGCCAACAATCTCCTGGGGCATCGTCTTTATTATGGATTAAGAACAACAATTAGACCTGACAGGAAGGCACTCGCCCCAGTTTTTATTGATAGGG AGAACGGGAAGACAGCTGGGTTCGAAGCAGCAGTTAGGCGTGCGATGCAGAAAACCAACTTCGGCAATCCTCATGTACGGACATCTCCAGAGTCATTTTA TACAAACACTTGGCCGGAGTGTTTCTGTCAATCGGAACCTAAAGACCCTGCTGATAAGTGCCCGCCGGACAATGTCCTGCAAATTCTGAATAACCAGCTA GAAAGCCAGATGGCAATTGGCTTAGAGCCTCATTTGCAGGGCAATGCAACTTCGTTGTTGGAAAGATAG
AA sequence Show only first row Show all	>Lus10037830 pacid=23167382 polypeptide=Lus10037830 locus=Lus10037830.g ID=Lus10037830.BGIv1.0 annot-version=v1.0 MRRHQHHHSRSHWKQGAGALRVTVAKLSIGGLVLLICTLSFLFSATHTRNKGSTGPSEINLDQLWESANSGSWRPSSAPRSHWPPPPKETNGYLRVRCNG GLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFHGIYDVEHFIQSLRYDVRIVESIPEIHKNGRTKKIKAFQLRPERDAPISWYTTEALQKMK QHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVEKLRTEGHFMAIHLRFEMDMLAFAGCFDIFSPKEQVLLKKYRDENFAKKKL VYNERRAIGKCPLTPAEVGLILRAMGFDNSTRIYLAAGELFGGERFMKPFRSLFPRLENHSSVDVSEELSGNSQGLLGSAVDYMVCLLADIFMPTYDGPS NFANNLLGHRLYYGLRTTIRPDRKALAPVFIDRENGKTAGFEAAVRRAMQKTNFGNPHVRTSPESFYTNTWPECFCQSEPKDPADKCPPDNVLQILNNQL ESQMAIGLEPHLQGNATSLLER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	0	1
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	2.6	0.9107
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	2.8	0.8761
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	4.2	0.9065
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	6.2	0.8766
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	7.4	0.8678
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	9.2	0.8576
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	9.4	0.8560
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035744 [exp]	9.5	0.7573
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	10.4	0.8596
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	11.0	0.8352

Compare expression of checked genes

Lus10037830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.