Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13750 149 / 6e-39 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT1G08300 134 / 6e-34 NVL no vein-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016661 [exp] 710 / 0 AT4G13750 2109 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022572 [exp] 480 / 4e-171 AT4G13750 95 / 2e-21 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10017105 [exp] 409 / 4e-138 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G317200 [exp] 307 / 2e-93 AT4G13750 2097 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037831 pacid=23167086 polypeptide=Lus10037831 locus=Lus10037831.g ID=Lus10037831.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTAAAAGTAGTTGCTGTTGAGAAGTTATTTTACAAAAATGTCATAAAACGTTGCGGGACCTCGTCTCAGAACAGATGCGAATGTAGTTGTC TTCTGCATGATGAAACTCTGGAATCTACGGCGACGGCGGATGCACATGCATTATTTCTGGAGCTTTCCCGTTTATTCCTCAACGGTACTCCAGATTTACA CCTGGCGAATTTTCTTTACATGATCACAACCATGGCTGAATCTGGCTCCACAGTGGATCAAACAGAGTTTTTCATTTTGAACTGCCAGAAGATACCAAAG TTGCCAGAGCAAGAAGTTATGTGGTCTCTCTACCCTCCACCTTCAAGACAAAATTGTGAATCCCTGCAACCAGATATTGTTTCTATGGCAACGGACCTTA TAAAATCTAACACAGTCTCTTCAACTGTAGACAACGGGTCCAAATCATTGAACTACCAGATGAAAGCCCGGTCGAATTGGCCTCCTGCAGATTGGAAGAC AGCACCTGGTTATGGTCCTCATGCAGCAGGTAACACAAGAATTAAAACTCTGAGCATTGAGAAGGATGCTGACATGACACTGACAGAAGGAGAGGCACCT ATCGTTAGCGATGGCGACTGGACCATCAGAGATGATCCAGGCTGTGAAACTGTCAAGGACTATCTCAGTCTTGCGTATAATCAAACGGATGGTGTGGATG GGACAGTTGATCCTGCACACTCTGAGGTAATGCCAGATCAAGCTCAGCGGCTGTCGTTGGGATTTCGCAGGAGAGACCGGTTTGCTATAACTGGTGGTTC CAATGACCAAGCGATGGCAACAGGAAGATCGGGGGAGCAGATTGCTTTCAGATACTTGACGGGGAAGTACGGAAAAGAAGCTGTAAGGTGGGTTAATGAA GCACAGGAGACTGGGTTACCCTATAACATGCTGGTGGTGAAAGAGCATGAGCATGGTGAGCAACAGCAGTATATTGAAGTGAAAGCTACAAAATCTGCGC GGAAAGACTTTTTTTTTATATCAGCAAGAATATGGCAATTTGCGGCTGAGAAAGGTGATGCTAATACCATTCTTCATTTACTTTTAGGGAATCACAATGC AATGATCACTTTATTGAAGAACCCAGTGAAGCAGTGCCAGCAAGGGAAGCTGCGTTTGGTGGTTGTGACGCCAACCCAGCAGAGTGGAGGTGAGCTTTTC CCACTGCTGGATGATGCTTGA
AA sequence Show only first row Show all	>Lus10037831 pacid=23167086 polypeptide=Lus10037831 locus=Lus10037831.g ID=Lus10037831.BGIv1.0 annot-version=v1.0 MKKLKVVAVEKLFYKNVIKRCGTSSQNRCECSCLLHDETLESTATADAHALFLELSRLFLNGTPDLHLANFLYMITTMAESGSTVDQTEFFILNCQKIPK LPEQEVMWSLYPPPSRQNCESLQPDIVSMATDLIKSNTVSSTVDNGSKSLNYQMKARSNWPPADWKTAPGYGPHAAGNTRIKTLSIEKDADMTLTEGEAP IVSDGDWTIRDDPGCETVKDYLSLAYNQTDGVDGTVDPAHSEVMPDQAQRLSLGFRRRDRFAITGGSNDQAMATGRSGEQIAFRYLTGKYGKEAVRWVNE AQETGLPYNMLVVKEHEHGEQQQYIEVKATKSARKDFFFISARIWQFAAEKGDANTILHLLLGNHNAMITLLKNPVKQCQQGKLRLVVVTPTQQSGGELF PLLDDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	0	1
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012016 [exp]	1.0	0.8136
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10020371 [exp]	4.5	0.7431
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10031707 [exp]	4.9	0.7538
AT1G60370			F-box and associated interacti...		Lus10008162 [exp]	10.7	0.7156
AT5G10695			unknown protein		Lus10042440 [exp]	11.7	0.7496
					Lus10002965 [exp]	15.6	0.6160
					Lus10008602 [exp]	17.7	0.6146
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10010853 [exp]	19.6	0.6249
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	22.4	0.6869
AT5G39020			Malectin/receptor-like protein...		Lus10008333 [exp]	22.6	0.7047

Compare expression of checked genes

Lus10037831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.