Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48100 613 / 0 Pectin lyase-like superfamily protein (.1) AT1G02460 503 / 7e-176 Pectin lyase-like superfamily protein (.1) AT1G56710 468 / 4e-163 Pectin lyase-like superfamily protein (.1) AT4G01890 456 / 9e-158 Pectin lyase-like superfamily protein (.1) AT5G14650 345 / 6e-115 Pectin lyase-like superfamily protein (.1) AT1G60590 331 / 6e-108 Pectin lyase-like superfamily protein (.1) AT1G10640 328 / 5e-107 Pectin lyase-like superfamily protein (.1) AT3G26610 305 / 5e-99 Pectin lyase-like superfamily protein (.1) AT1G23460 296 / 1e-95 Pectin lyase-like superfamily protein (.1) AT1G70500 289 / 1e-92 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017109 [exp] 829 / 0 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 494 / 4e-172 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 492 / 3e-171 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 359 / 7e-119 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 353 / 8e-117 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 346 / 8e-114 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 334 / 1e-109 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 308 / 1e-99 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 277 / 1e-88 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152000 [exp] 649 / 0 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 636 / 0 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 527 / 0 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 525 / 0 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 512 / 7e-180 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 509 / 2e-178 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 354 / 9e-118 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 345 / 1e-113 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 332 / 1e-108 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 302 / 2e-97 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10037834 pacid=23167312 polypeptide=Lus10037834 locus=Lus10037834.g ID=Lus10037834.BGIv1.0 annot-version=v1.0 ATGGAGATCGTCATTGCTCGCCGTGCTCTTCTGCTAACTGTGGTACTAGCAACAATGGCGCTTGCGTTGCACAATTCGTGCATTGTTGTTGTACAAGGAA GGCACACTTTCCATAAGGCCAAAAAGGGTAAACATATTCCACCTAATTCCCCTGTTCCTTCTCCAGAGTATAGTAATCCTCCCCCTCCTCCAGCTTCCTC TCTTGTTCCGTCCGACCCGTACCCGAATGAGCCGCCCGGCGACTCGGACGACTGCATTTTCGACGTCAGGTCTTACGGCGCTGTCGGGGATGGGTCCACT GACGACACGGCGGCGTTTAGAGCCGCTTGGAAAGATGCCTGCGGTGTTGAGTCGGCTACAGTGCTTGCTCCTTCCGGGTTTAGCTTCATGATCACCTCCA CCATTTTCAATGGTCCCTGCAAGCCTGGTCTCGTTCTTAAGATAGATGGGTGCTTAATGCCGCCGGACGGGCCGGATTCGTGGCCGGACGGGGACAGCAA GCAGCAGTGGTTGGTGTTTTATAGGTTAAACGACATGACGCTCACGGGAGAAGGAACCATCGAAGGGAACGGTGACAAGTGGTGGGATCTCCCCTGCAAG CCTCACCGGGGAACGGACGGAACGGCGTCATCTGACGGGTGTGAGAGCCCAACTTTAATCCGGTTCTTCATGAGCTCGAATTTGGTAGTGAGCGGAATAA GGATCCAGAACAGCCCGATGTTCCACATGAAGTTCGACGGATGCGACGGAGTGTTGATAGAGAAGATACAAATCTCTTCGCCGAAGCTCAGTCCGAACAC AGACGGGATCCACATCGGGAACACAAACAACGTCGGAATATACAACTCCATGATCAGCAACGGGGACGATTGCGTATCAATTGGGACCGGAACGTCAAAT ATCGACATCGAGGGTCTCACTTGCGGGCCTAGTCACGGGATCAGCATCGGGAGCTTAGGAGTGCACAACTCAAAGGCGTGCGTGTACAACATAACAGCCC GAAACCTCCTGATCCGCGAATCGGACAACGGGGTCCGGATCAAGACGTGGCAGGGTGGATCAGGCTCGGTATCCGGGATATCGTTCGAGAACATCCAGAT GGAGAACGTCCGGAACTGCATCAACATCGACCAGTATTACTGCAACTCGAAGTCGTGTGAGAACCAAACGTCCGCAGTCTATGTGAACGACATCTCCTTC CGCAACATAAAGGGAACCTACGACGTCCGGACCCCGCCGGTCCACTTCGCCTGCAGCGACACCGTGGCGTGCACCAACATCACGCTGTCCGAGGTGGAGC TCCTCCCTCACGAGGGCGAATTGCTTGATGATCCCTTCTGTTGGAACGCGTACGGGACCCAGGAGACCGTCACCATCCCTCCCATCGAATGCCTTAACGA CGGGGTGCCTCAGAATGTGGAAGAGCTCTCTGCCTATGCTTGCTGA
AA sequence Show only first row Show all	>Lus10037834 pacid=23167312 polypeptide=Lus10037834 locus=Lus10037834.g ID=Lus10037834.BGIv1.0 annot-version=v1.0 MEIVIARRALLLTVVLATMALALHNSCIVVVQGRHTFHKAKKGKHIPPNSPVPSPEYSNPPPPPASSLVPSDPYPNEPPGDSDDCIFDVRSYGAVGDGST DDTAAFRAAWKDACGVESATVLAPSGFSFMITSTIFNGPCKPGLVLKIDGCLMPPDGPDSWPDGDSKQQWLVFYRLNDMTLTGEGTIEGNGDKWWDLPCK PHRGTDGTASSDGCESPTLIRFFMSSNLVVSGIRIQNSPMFHMKFDGCDGVLIEKIQISSPKLSPNTDGIHIGNTNNVGIYNSMISNGDDCVSIGTGTSN IDIEGLTCGPSHGISIGSLGVHNSKACVYNITARNLLIRESDNGVRIKTWQGGSGSVSGISFENIQMENVRNCINIDQYYCNSKSCENQTSAVYVNDISF RNIKGTYDVRTPPVHFACSDTVACTNITLSEVELLPHEGELLDDPFCWNAYGTQETVTIPPIECLNDGVPQNVEELSAYAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	0	1
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10004496 [exp]	1.0	0.9278
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	1.4	0.9246
AT1G65900			unknown protein		Lus10020799 [exp]	1.7	0.9176
AT1G22490	bHLH	bHLH094	basic helix-loop-helix (bHLH) ...		Lus10000332 [exp]	2.8	0.9153
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	4.5	0.8746
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10005086 [exp]	8.1	0.8892
AT3G16300			Uncharacterised protein family...		Lus10025833 [exp]	8.4	0.8710
AT5G09760			Plant invertase/pectin methyle...		Lus10005587 [exp]	8.9	0.8624
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	9.0	0.8586
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10029905 [exp]	15.8	0.8380

Compare expression of checked genes

Lus10037834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.