Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40100 392 / 2e-138 LHCB4.3 light harvesting complex photosystem II (.1.2) AT5G01530 343 / 4e-119 LHCB4.1 light harvesting complex photosystem II (.1) AT3G08940 338 / 2e-117 LHCB4.2 light harvesting complex photosystem II (.1.2) AT3G54890 145 / 2e-42 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT1G15820 113 / 9e-30 CP24, LHCB6 light harvesting complex photosystem II subunit 6 (.1) AT3G61470 105 / 8e-27 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT3G47470 104 / 2e-26 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT4G10340 104 / 3e-26 LHCB5 light harvesting complex of photosystem II 5 (.1) AT2G34430 101 / 3e-25 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1) AT1G29930 101 / 4e-25 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040191 [exp] 397 / 2e-140 AT2G40100 412 / 1e-146 light harvesting complex photosystem II (.1.2) Lus10028299 [exp] 396 / 2e-140 AT2G40100 412 / 7e-147 light harvesting complex photosystem II (.1.2) Lus10035512 [exp] 345 / 8e-120 AT3G08940 459 / 4e-165 light harvesting complex photosystem II (.1.2) Lus10030403 [exp] 181 / 6e-58 AT2G40100 102 / 1e-28 light harvesting complex photosystem II (.1.2) Lus10040391 [exp] 149 / 1e-43 AT3G54890 371 / 1e-131 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10023509 [exp] 148 / 3e-43 AT3G54890 367 / 3e-130 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10021663 [exp] 108 / 7e-28 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10011361 [exp] 108 / 1e-27 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10006416 [exp] 108 / 2e-27 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067300 [exp] 392 / 1e-138 AT2G40100 420 / 7e-150 light harvesting complex photosystem II (.1.2) Potri.016G115200 [exp] 346 / 3e-120 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2) Potri.006G099500 [exp] 340 / 4e-118 AT3G08940 474 / 7e-171 light harvesting complex photosystem II (.1.2) Potri.008G041000 [exp] 142 / 3e-41 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 135 / 1e-38 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.001G210000 [exp] 109 / 3e-28 AT1G15820 424 / 7e-152 light harvesting complex photosystem II subunit 6 (.1) Potri.006G139600 [exp] 109 / 3e-28 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.003G020400 [exp] 108 / 5e-28 AT1G15820 421 / 9e-151 light harvesting complex photosystem II subunit 6 (.1) Potri.003G171500 [exp] 108 / 9e-28 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.015G062200 [exp] 106 / 3e-27 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10037836 pacid=23163891 polypeptide=Lus10037836 locus=Lus10037836.g ID=Lus10037836.BGIv1.0 annot-version=v1.0 ATGGTAACCACCGCATCTTCCCCTGCCGCCACAACCCAATTCTCCGGCAGGACCCGGATCCAAACTCCACGACCCAACCTCCTGCGGGTCCAGTCCCTCT TCAGTCGATTCCGCAAGATCAAGAAACCGATTACTCCTCCACAGCCGCTGCAGAAGAAGAAGAAGGCCTCATCAATCTCAAAAGGAGGCAGCAGGCTTGT GTGGTTCCCTGGGGCTAAACCACCCGAGTGGCTTGACGGAACCATGGTCGGAGACCGCGGCTTCGACCCCCTCGGATTAGCCAAGCCCCCCGAGTACCTT CAGTTTGACTTTGACTCCCTCGACCAGAACCTCGCCAAGAATTTGCCAGGGGATGTCATTGGGGTGATTAGGGCAGCAGAGACAACCGAGGTCAAGCCGA CGCTGTTTAAGCCCTACGATGAGGTGTTTGGAATCCAGAGGTTTAGAGAGTGCGAGCTTATTCACGGTAGGTGGGCAATGTTGGGCACGCTCGGCGCCCT CGCCGTCGAGACCCTCACCGGCGTTGCGTGGCAAGATGCTGGCAAGGTGGAGCTAGTTGAAGGAGCGTCGTACCTTGGGCAGCCGCTACCCTTCTCGCTG AGCACGCTGATATTGATCGAGGTGTTGGCTATTGGCTACATCGAGTTCCAGAGGAACGCTGAGCTGGATCCCGAGAAACGGGTGTACCCAGGCGGCTACT TTGACCCCCTAGGCCTAGCATCCGACCCGGAGAAGAAGGAGAAGCTTCAGCTGGCGGAAATCAAACACTCGAGGCTGGCCATGGTAGCCTTTCTCATCTT TGCCGTCCAAGCTGCTTTTACGGGCAAAGGTCCCGTTAGCTTTCTTGCTACTACTTTCGCCCACTGA
AA sequence Show only first row Show all	>Lus10037836 pacid=23163891 polypeptide=Lus10037836 locus=Lus10037836.g ID=Lus10037836.BGIv1.0 annot-version=v1.0 MVTTASSPAATTQFSGRTRIQTPRPNLLRVQSLFSRFRKIKKPITPPQPLQKKKKASSISKGGSRLVWFPGAKPPEWLDGTMVGDRGFDPLGLAKPPEYL QFDFDSLDQNLAKNLPGDVIGVIRAAETTEVKPTLFKPYDEVFGIQRFRECELIHGRWAMLGTLGALAVETLTGVAWQDAGKVELVEGASYLGQPLPFSL STLILIEVLAIGYIEFQRNAELDPEKRVYPGGYFDPLGLASDPEKKEKLQLAEIKHSRLAMVAFLIFAVQAAFTGKGPVSFLATTFAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	0	1
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	2.0	0.8188
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	2.6	0.8452
AT2G35470			unknown protein		Lus10030980 [exp]	3.0	0.7987
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	3.2	0.8074
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10023792 [exp]	4.0	0.8262
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10039861 [exp]	5.7	0.8017
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	8.9	0.7744
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020849 [exp]	9.5	0.7766
AT5G13030			unknown protein		Lus10031224 [exp]	10.4	0.7857
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	12.6	0.8221

Compare expression of checked genes

Lus10037836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.