Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 268 / 5e-82 unknown protein AT3G09000 169 / 1e-45 proline-rich family protein (.1) AT5G01280 117 / 7e-28 unknown protein AT2G38160 89 / 3e-19 unknown protein AT1G27850 57 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030402 [exp] 410 / 6e-136 AT2G40070 561 / 0.0 unknown protein Lus10040188 [exp] 316 / 4e-100 AT2G40070 533 / 0.0 unknown protein Lus10004390 [exp] 298 / 3e-97 AT2G40070 321 / 5e-107 unknown protein Lus10002493 [exp] 154 / 9e-41 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 151 / 2e-39 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10027767 [exp] 124 / 2e-29 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 107 / 1e-23 AT2G40070 280 / 4e-83 unknown protein Lus10025209 [exp] 63 / 6e-10 AT3G08670 398 / 6e-131 unknown protein Lus10021382 [exp] 62 / 1e-09 AT3G08670 432 / 4e-145 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190300 [exp] 330 / 2e-105 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 316 / 4e-100 AT2G40070 321 / 1e-102 unknown protein Potri.016G114900 [exp] 176 / 1e-47 AT2G40070 352 / 7e-114 unknown protein Potri.016G139500 [exp] 68 / 9e-12 AT3G08670 245 / 2e-73 unknown protein Potri.010G177000 [exp] 63 / 3e-10 AT2G40070 82 / 9e-17 unknown protein Potri.006G110700 [exp] 56 / 5e-08 AT3G08670 251 / 1e-75 unknown protein Potri.010G056200 [exp] 49 / 8e-06 AT1G27850 240 / 1e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037838 pacid=23163684 polypeptide=Lus10037838 locus=Lus10037838.g ID=Lus10037838.BGIv1.0 annot-version=v1.0 ATGAATCGGAGTTTTAGGAGTCAGGACTCTCAGCATATGCAGCAGCAAATGCAAGCGGCGGTGGTGAAGCAGAGGCAGCAGTTGAGAGCCTCGATGATGA TGAAGGACAAGGAAGAGGAACTGGCCTTGTTCTTGGAAATGAGGAAGCGCGAGAAAGAGCAGAACAATCTTCTTATGCTCAACGAGACCGGCGATTTTGA TGCGCCGTTAGGTTCGAAGCCAGGCACCTCTCCTATATTCAACATCTCTTCCTCAACTCCGGCGAGAAAAACCGGCGGGGGTTGGGTTTTTTTCATGACG ATTTTCTCAACTCCGAGAACGATAAGAATGACTATGACTGGAGCTAATCGATGTCTTGTGCTCTTCTTTTCTCCGAAGCTTTTAACACCTCCTGGAACAC CTCTTTTCCCTTCCTTGGAAATGGAATCACAAAAGACTGTCATGAGTCGATCTGGTACTCCGAAGGCTCACCCCACAGCCCTCAAGTCTAGGCTAGCAAA TAACCAGCCAGATGGGACAGCTGGTGGCAGTTTAATATCAAGACAATCTGCTTCGTCACCTGGGTTGAATTCTTCCGGTACTGGGGTTCGCAGGCCGTCA TCATCTGGCGGTCCTGGTTCAAGGCCTGCGACTCCAACTGGGCGCCCATCACTGACAACACCAGCATCCAAACCTTCACGGTCTTCAACACCTACCTCCC GAGCTAGCTTGCCTCCATCATCTAAGCCCACAGTTTCAGCAACTAGGTCAAGCAGTTCCACTTCATCTAGGCCTACTGGTCCTGCAAGATCTTCTACACC AACTCGAACATCAACAGCTTCATCAGTGAAGTCTACAGTTCCTGCAAGATCCTCTACACCAACAAGGTCTACTACTGCAAGATCTTCAACACCGACGAGA TCGACTGCGAGATCCTCAACACCTACAGAAAGACACTCTATACCACCTCCGTCCAGGTCAGCTCCAAGGGCGTCAACTCCAACCCGAAGACCATCCACTC CATCTAGTGCACCAAGTATATCTTCTGCACCACCAATCAAGTCATTGGCTTCAGTAACCAAGTCAGTTCCCACTACTACAGCTCGAAATCCAGTACCATC ACGTGGGAGTTCTCCAGCACCCAAATCTAGACCATGGAATCCTTCAGACATGCCTGGTTATTCACTAGATGCTCCACCAAACTTACGGACATCATTATCA GACAGGCCCATTTCAGTTTCTAGGGGTAGGCCTGGAGCACCAAGTTCACGATCTTCTTCTATTGAGCCGGTTTCGAATGGAAGAATAAGAAGGCAGTCAT GTTCCCCTTCAAGAGGACGTGCCCCTAACGGCATGTTACACAACAGTGGGAGCTCTATGCCTGCAGTGAATCGTTTGTATGCAAAAGCTAATGATAACGT GAGTCCCGTTTTGATGGGGACCAAAATGGTGGATAGGGTGATGAATATGCGGAAATTAGCACCTCCGAAACATGATGACAAACATTCACCGCTTGGTAAC TTGTCGGCCAAGTCTTCGTCGCCAGACAGCTCAGGCTTTGGAAGAACTATGTCCAAGAAGTCTCTTGATATGGCCATCAGGCACATGGATATAAGGAGAA GCATTCCAGGTAATCTACGGCCATTGATGACCAACATTCCAGCATCCTCAATGTACAGTGTGAGACCAGGGCCTGCACGAAGCAGAACCATCAGCGTTTC GGACTCCTCCCCTCTTGCAACAAGCAGTAATGCTAGTTCTGAATTGAGTGTCAGCAACAACGGTGGTCTTTCATTCGAGTTGGAGGATGAGATCGGCAAT GAGAGACACGGCCGTTCTCCGATTCGAGGCAGGTGA
AA sequence Show only first row Show all	>Lus10037838 pacid=23163684 polypeptide=Lus10037838 locus=Lus10037838.g ID=Lus10037838.BGIv1.0 annot-version=v1.0 MNRSFRSQDSQHMQQQMQAAVVKQRQQLRASMMMKDKEEELALFLEMRKREKEQNNLLMLNETGDFDAPLGSKPGTSPIFNISSSTPARKTGGGWVFFMT IFSTPRTIRMTMTGANRCLVLFFSPKLLTPPGTPLFPSLEMESQKTVMSRSGTPKAHPTALKSRLANNQPDGTAGGSLISRQSASSPGLNSSGTGVRRPS SSGGPGSRPATPTGRPSLTTPASKPSRSSTPTSRASLPPSSKPTVSATRSSSSTSSRPTGPARSSTPTRTSTASSVKSTVPARSSTPTRSTTARSSTPTR STARSSTPTERHSIPPPSRSAPRASTPTRRPSTPSSAPSISSAPPIKSLASVTKSVPTTTARNPVPSRGSSPAPKSRPWNPSDMPGYSLDAPPNLRTSLS DRPISVSRGRPGAPSSRSSSIEPVSNGRIRRQSCSPSRGRAPNGMLHNSGSSMPAVNRLYAKANDNVSPVLMGTKMVDRVMNMRKLAPPKHDDKHSPLGN LSAKSSSPDSSGFGRTMSKKSLDMAIRHMDIRRSIPGNLRPLMTNIPASSMYSVRPGPARSRTISVSDSSPLATSSNASSELSVSNNGGLSFELEDEIGN ERHGRSPIRGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40070			unknown protein		Lus10037838 [exp]	0	1
AT2G40070			unknown protein		Lus10030402 [exp]	4.0	0.8584
AT1G72790			hydroxyproline-rich glycoprote...		Lus10006024 [exp]	4.2	0.8713
AT3G04470			Ankyrin repeat family protein ...		Lus10032775 [exp]	4.4	0.8197
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10030962 [exp]	5.9	0.8431
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	8.8	0.8392
AT5G06940			Leucine-rich repeat receptor-l...		Lus10011302 [exp]	16.5	0.8391
AT3G01810			unknown protein		Lus10037001 [exp]	17.3	0.8258
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10025946 [exp]	21.5	0.8517
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	26.6	0.8399
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	28.1	0.7970

Compare expression of checked genes

Lus10037838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.