Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40060 99 / 1e-24 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 97 / 8e-24 Clathrin light chain protein (.1) AT2G20760 89 / 4e-20 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030401 [exp] 275 / 8e-93 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 164 / 2e-49 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10004389 [exp] 160 / 4e-48 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10018480 [exp] 100 / 1e-24 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10011194 [exp] 98 / 1e-23 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10018582 [exp] 75 / 4e-15 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10039815 [exp] 72 / 3e-14 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190400 [exp] 119 / 4e-32 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1) Potri.008G066800 [exp] 118 / 7e-32 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.016G114700 [exp] 108 / 5e-28 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.019G102000 [exp] 98 / 3e-23 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.011G049500 [exp] 80 / 3e-17 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.004G040100 [exp] 78 / 2e-16 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [flax] [poplar] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Lus10037839 pacid=23163901 polypeptide=Lus10037839 locus=Lus10037839.g ID=Lus10037839.BGIv1.0 annot-version=v1.0 ATGAGCTCCCGCATTAGCTTCATAGCAACCATAGTCGAAATCCTTCAACCGTCGTTAAATACTTCTGCAAATCACCCCATCTCATTCGACGACTCGGAAA TCACTGAAATCGACTCACCGGCTGGCCACATCGGCAGCAACAGCCATAACGATGGTGGTGGCTTCGTGGGCTACAATTCTGAACAGTTCGATGATGATCC TGTTCCGATCTACGGTTCAGCTGGGGAATTCGTGGCGGTAGAGGAGAATGTCAGCGGAGGTTACGACGGAGAGCTTGATGGATCAAATGGTGCTGTTTTG CCGCCTCCCTCGGAGATGGCGGAGATTGGACTGGCTCTCAGAGAGTGGAGAAGAGAGAATGCGTTGCGGCTGGAGGAGAAGGAGAAGAAGGAGAAGGAGC TACTGAGCAAAATTATAGAGGAGGCTGAAGATTACAAATTAGAATTCCATAAGAAGAGGGGGGTTTCTTGTGAGAGCAATAAAGCAATCAACAGGGAAAC TGAGGAGTTCACCAAATCATTTGTTCTCATGGATGCAACAACGATGTGGCAGCTATATGTGGCTAAGCTGGATAAGTTTCATGCTGAGGCCGACAAGGAT TACTGGAAGTCAATAGCAGAGCTCATTCCAAATGAAGTGCCCGCTATCGGAAAGAAGAAAGCGAAGAAGGACCAGGAGAAGAAGAACCCTTCAATTACAG TGGTCCGAGGTCCGAGGTCCGAAACCAGGGAAACCAACAGAGCTCTCAAGGATGCGTCACATCCACGTACAGCTGAAACACAGTACCCCAACTCACCTGA AGCTCACTCCAACGGATAA
AA sequence Show only first row Show all	>Lus10037839 pacid=23163901 polypeptide=Lus10037839 locus=Lus10037839.g ID=Lus10037839.BGIv1.0 annot-version=v1.0 MSSRISFIATIVEILQPSLNTSANHPISFDDSEITEIDSPAGHIGSNSHNDGGGFVGYNSEQFDDDPVPIYGSAGEFVAVEENVSGGYDGELDGSNGAVL PPPSEMAEIGLALREWRRENALRLEEKEKKEKELLSKIIEEAEDYKLEFHKKRGVSCESNKAINRETEEFTKSFVLMDATTMWQLYVAKLDKFHAEADKD YWKSIAELIPNEVPAIGKKKAKKDQEKKNPSITVVRGPRSETRETNRALKDASHPRTAETQYPNSPEAHSNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10037839 [exp]	0	1
AT1G11880			transferases, transferring hex...		Lus10000535 [exp]	16.5	0.8053
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	22.1	0.8322
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10033644 [exp]	26.4	0.7977
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	32.9	0.8155
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	36.9	0.8101
					Lus10031873 [exp]	42.7	0.8087
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	45.5	0.8079
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10011697 [exp]	47.6	0.7991
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	49.0	0.8105
AT1G18010			Major facilitator superfamily ...		Lus10019528 [exp]	57.3	0.7523

Compare expression of checked genes

Lus10037839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.