Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 751 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 697 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 695 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 686 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 671 / 0 EFR EF-TU receptor (.1) AT5G46330 460 / 1e-143 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 422 / 6e-130 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G24130 413 / 6e-128 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 414 / 1e-127 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G65700 407 / 2e-125 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004388 [exp] 984 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 929 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 923 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 912 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 909 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 907 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 901 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 894 / 0 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 890 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 912 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 904 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 897 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 882 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 870 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 855 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 840 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 840 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 840 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 835 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037840 pacid=23163766 polypeptide=Lus10037840 locus=Lus10037840.g ID=Lus10037840.BGIv1.0 annot-version=v1.0 ATGGCAAAATACACAGCTCTGCATTTCTTTCTCTTCCCCTACTTCACCTTCGTGTTCTTCTTCATTTCACAATATGTCGCTTCACAAAACGACAGCGTAG ACGCTCAAAGCCTGCTTCAACTTAAATCCTTCATCACCGGCGACCCACTTAGCGTCACTGCCTCATGGAACATTTCCACCCACTCCTGCCAGTGGCGTGG AGTCATCTGCGGCCGGAAGCACCGGAGAGTCACTGTTCTCAATTTACAGTCCCTGCAGCTCACTGCCACACTGTCTCCCCACATTGGAAACCTCACCTTT CTTCGGCGTCTTTATATCTTCAACAACTCCTTCACCGGAACTATCCCGGACGAAATCGGCCGCCTCCGCCGACTCCAGGAGCTCTATCTCACTAACAACT CCTTCTCCGGCCAAATTCCCGCCAGTATTTCAAGATGCTCGAATCTGGTCGCTTTCGATGCTGGGTATAATCGCCTTCAAGGAACTTTGTTGCCTGAATT CGGTTCGTTGCCGAATCTCCGAATCTTTTCCGTCCGTCGGAATTTCCTCGCCGGGACGATTCCTTCTTCTTATGGGAATTTGTCGAACCTCGAGCAGTTC TGGGCAGGGAGCAACAATTTGGCGGGTAGGATTCCTGAGGAATTTGGGAGGCTGAAGAAACTGGAGACTCTACATTTGACTGTCAATTCGCTCTCGGGGA ACATTCCTGATTCAATCTTCAACCTCTCGTCTCTGAGAATTTTGGTTTTGGGGGAAAACCAGTTTTCAGGAAATCTCCCCTGGGATTTGGCATCCTCTCT TCCCAACCTTCAAAATTTCGACGTGGCTTTCAACAAGTTGACAGGTCGGATTCCTGCTTCTTTCTCCAATGCTACGAATTTAGGAATGGTTCAGCTTCAG ACCAATGGTTTCACTGGGGAAGTTCCCACCTTTGGCAACTCCCCGTTTCTTTTCCGTTTATCCATGGCCAGTAATTTGCTTGGCAATGGAGAAAACGGGA CTACTAATGATTTGAGGTTTCTATCATCGTTGACCAACGCTACTGGTCTAGATGCATTGCGGATTGACCAGAATAATTTTGGAGGGAGATTGCCGGAAGT AATTGGGAATTTGTCAGTCATGCTTAGGATTCTTCACTTTGGATATAATAAACTGAGTGGAACAATCCCAGATGGGATACAGAATCTCATTGGACTCCAG AGGCTTGTAGCCTCAGATAACAGTTTCTCAGGTACGATTCCCACGTTTCTTGGAAAGCTTCAGAATCTAGGGATGCTGCTCTTGGGGTTTAATTCATTTA GTGGGCAGATTCCAACCTCAATTGGGAATCTGACAAGGTTGACCGTTCTTGATTTGTCAAGGAACAAATTGGAAGGAGAGATCCCTTCTGTTCTTATCAA TTGTCAAACTCTGACTACTTTGGATATGTCTAACAACAACCTCAGTGGAAGTATACCAGCAGGGCTAATGACCATTTCGTCCTTGTCAGATTTCCTTGAC CTTGGTGGAAACAGGTTTACTGGTCAGATTCCTCGTGAGATTGGAAACTTGAGAAACTTGGGTAGCCTTGGCTTGTATGGAAATATGTTATCAGGAGATA TTCCTAGTAGTATGGGGAGTTGTGTCAGGATGGAACTTGTTTATATTCAAGACAATCGCTTGCAAGGATCCATTCCGGAATCTCTGAGCGGATTGAGAGG TCTTCGGGAGTTGAACGTTTCAGGAAACAATTTGTCTGGTCAGGTTCCGGAGTTTTTTCAGAGTTTCAGCTCACTTCAGCTCCTGAACCTTTCATACAAC AGCTTTGAAGGTGAAGTACCAAATGAAGGAGTTTTCAAGAATGCGAGTGCAGTTTCAGTCACTGGAAACAGCAAGCTTTGTGGAGGGATTCCAGAACTTT TTTTGCCTAGCTGTAGCTTCAAACGAACAGGGAAAAAAGGCATAATGAGTAAGCGATGGAAGATTGTGATAGCCACATTATCTAGTCTTCTTGCTGCTGC TTTTGTTATTTCTTGTTTGGCAAGAAAGAGAAGGAAACAGCAACCACAAGAGCAAACCAATGTTTCTGCTGTTGATAACTTGCACTTAAAGGTATCTTAT CAAAGTCTGTCCAAAGCTACAGATGGGTTCTCCTCTGCCAATATGATTGGTGCTGGTAGTTATGGCTCTGTGTACAAAGGAACCCTTCATAACAACAGTG GAGCTGATCTAATAGCTGTAAAAGTGTTCAATCTGTGGCGGCAGGGCGCTTCAAAGAGTTTTCTGGCGGAGTGCGAGGCATTAAGGAGTATCAGTCACAG AAATTTGGTGAAAGTTCTCACTGCTTGTTCAGGCATTGATTATCAGAGAAATGACTTCAAAGCATTGGTTTATGAGTTCATGGAAAATGGTAACTTAGAA AAGTGGATACATCCAACAGATATCGGTGAGAGGGATGCTAGCTATACGACGAGGAGTTGTTTGAACTTGTTACAAAGACTGAATGTTTCAATTGATGTTG CTTCTGCACTAGAGTACCTGCATCATCAGTGTGAAACGCCAATAGTCCACTGTGATATCAAGCCAAGTAATGTCCTTCTGGACAGTGACATGGTGGGACA TCTTGGTGACTTTGGATTGGCAAAGCTCCTTTCGGAAGTCAACTTTGGCTCTTCTATCAGCAGCTCCATTGGAATAAGAGGAACAGTTGGTTATGCTCCT CCAGAATATGGAATGGGGGGTGTAGTGTCGACACAGGGAGATGTGTACAGCTATGGCATCCTATTGCTGGAGATTTTCACAGCAAAGAGACCAACCCATG ATATGTTCAAAGAGGGTCTCAATCTTCACGACTTGGTCTGCAGAGCTCTACGTGGAAATGTGGTTGAAATTCTGGATCCACTTCTCCTCTCAAAACCTTC CAAGGATTACAGCGAGGAGTACTCGAGAAAAGACATAGAGGCCCTGGCCTCCATACTTGAAGTTGGTGTTGCTTGCTGCTCAGACTCCCGACACCACCGG ATGAACATAAAGGATGCAGCAGCAAGGCTTCTTTCTGCTAAAGAACTTATTGAATCTGGACATGAGGAGCTCAAACGACTGTAA
AA sequence Show only first row Show all	>Lus10037840 pacid=23163766 polypeptide=Lus10037840 locus=Lus10037840.g ID=Lus10037840.BGIv1.0 annot-version=v1.0 MAKYTALHFFLFPYFTFVFFFISQYVASQNDSVDAQSLLQLKSFITGDPLSVTASWNISTHSCQWRGVICGRKHRRVTVLNLQSLQLTATLSPHIGNLTF LRRLYIFNNSFTGTIPDEIGRLRRLQELYLTNNSFSGQIPASISRCSNLVAFDAGYNRLQGTLLPEFGSLPNLRIFSVRRNFLAGTIPSSYGNLSNLEQF WAGSNNLAGRIPEEFGRLKKLETLHLTVNSLSGNIPDSIFNLSSLRILVLGENQFSGNLPWDLASSLPNLQNFDVAFNKLTGRIPASFSNATNLGMVQLQ TNGFTGEVPTFGNSPFLFRLSMASNLLGNGENGTTNDLRFLSSLTNATGLDALRIDQNNFGGRLPEVIGNLSVMLRILHFGYNKLSGTIPDGIQNLIGLQ RLVASDNSFSGTIPTFLGKLQNLGMLLLGFNSFSGQIPTSIGNLTRLTVLDLSRNKLEGEIPSVLINCQTLTTLDMSNNNLSGSIPAGLMTISSLSDFLD LGGNRFTGQIPREIGNLRNLGSLGLYGNMLSGDIPSSMGSCVRMELVYIQDNRLQGSIPESLSGLRGLRELNVSGNNLSGQVPEFFQSFSSLQLLNLSYN SFEGEVPNEGVFKNASAVSVTGNSKLCGGIPELFLPSCSFKRTGKKGIMSKRWKIVIATLSSLLAAAFVISCLARKRRKQQPQEQTNVSAVDNLHLKVSY QSLSKATDGFSSANMIGAGSYGSVYKGTLHNNSGADLIAVKVFNLWRQGASKSFLAECEALRSISHRNLVKVLTACSGIDYQRNDFKALVYEFMENGNLE KWIHPTDIGERDASYTTRSCLNLLQRLNVSIDVASALEYLHHQCETPIVHCDIKPSNVLLDSDMVGHLGDFGLAKLLSEVNFGSSISSSIGIRGTVGYAP PEYGMGGVVSTQGDVYSYGILLLEIFTAKRPTHDMFKEGLNLHDLVCRALRGNVVEILDPLLLSKPSKDYSEEYSRKDIEALASILEVGVACCSDSRHHR MNIKDAAARLLSAKELIESGHEELKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10037840 [exp]	0	1
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Lus10009877 [exp]	5.0	0.7957
AT3G04130			Tetratricopeptide repeat (TPR)...		Lus10036975 [exp]	13.7	0.7086
AT2G04220			Plant protein of unknown funct...		Lus10039183 [exp]	17.7	0.7478
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10033946 [exp]	19.8	0.7338
AT5G11350			DNAse I-like superfamily prote...		Lus10008086 [exp]	22.4	0.7653
AT4G20190			unknown protein		Lus10038386 [exp]	37.1	0.6923
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10005285 [exp]	47.7	0.7480
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	54.8	0.7252
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	60.0	0.7137
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10030424 [exp]	61.6	0.7349

Compare expression of checked genes

Lus10037840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.