Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05570 983 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT4G35560 268 / 1e-74 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030399 [exp] 2056 / 0 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10009082 [exp] 293 / 6e-83 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10035989 [exp] 244 / 2e-66 AT4G35560 971 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10027810 [exp] 63 / 3e-11 AT5G05570 84 / 2e-19 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001254 [exp] 55 / 1e-08 AT5G05570 85 / 9e-20 transducin family protein / WD-40 repeat family protein (.1.2) Lus10002478 [exp] 45 / 2e-05 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187700 [exp] 1258 / 0 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.016G117800 [exp] 926 / 0 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069700 [exp] 734 / 0 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069750 [exp] 441 / 8e-146 AT5G05570 377 / 4e-122 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G101600 [exp] 278 / 7e-78 AT4G35560 1037 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G117700 [exp] 59 / 2e-10 AT5G05570 90 / 3e-22 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G101600 [exp] 59 / 4e-10 AT5G05570 72 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10037841 pacid=23163842 polypeptide=Lus10037841 locus=Lus10037841.g ID=Lus10037841.BGIv1.0 annot-version=v1.0 ATGTTCACCAAATTATTTCATAAGAACGCTGATGCGGGGGAGCAACCTTCGTCCTCTGCTCAGGATAATGCATCGAAAGGAATTTTGTCATCCAAAGACA TAAACCCTCGTGTAAATCTCCACTACGGGATCCCCTCAACCGCGTCTGTGATGGCTTTTGATCCCATTCAAAGCCTGTTGGCATTAGGAACATTAGATGG GAGGATCAAAGTAATTGGTGGTGACAATATTGAAGGTCTTATGGTCTCTCCTAAGCAGTTGCCCTTTAAGTACTTGGAGTTCCTACAAAATCAAGGTTTC TTGGTCAGCGTCTCAAGTGAAAATGAGATCCAGGTTTGGGATTTAGAACACAGAAGAATGGCATCTTCTCTGCGATGGGAGTCCAGTATAACTGCTTTTT CTGCCATACATGGATCAAGTTATATGTATGTTGGAGATGAGTATGGTATGGTGTATGTGGTCAAATATAATGCAGAAGACATGTCGCTTGTGCCTCTTCC ATACTATGTTCCAACAAGTGCAATAGATGAAGCCTCTGGAGGACCATCATCTGACCAACACTCTGTTGTAGGAGTTCTCCCTCAGCCATCTTCTTGTGGA AATAGGCTACATAACTCTCCTTCTTTTTGCAGAGTGTTAATCGCATATGATAATGGGTTACTTATTCTTTGGGATGTATCCGAAGATAAAGTTATTGTAG TTAAAGGGAACAAAGATCTCCAGTTGAAGAGTAAGATAGCAGTCAACTCTCAAGAAGAAGTTCGACAGGAACCTTCTGATGATGAACAATTGGATAAAGA GATAAGTGCTCTATGTTGGACATCTGGTAGTGGGACCGTTCTCGCTGTGGGCTATGTTGATGGCGACATAATGCTGTGGAACTTATCAACAACTGTTCCA TCTAGAGACAACAATGTTGTTAAGCTACAATTATCGTCAGATGACAGAAGACTACCAGTCATTATCTTGCATTGGTATCCAAAAAAATCACGTGATGATT GTGGCCAACTCTTTGTCTATGGTGGTGATGCAATTGGATCTGAAGAAGTCCTAACGATTTTAAATCTTGACTGGTCTGCTGGGATTGGCAATCTAAAATG CATCGGGCGTACAGACATTACTCTAAATGGTTCTTTTGCTGATATGGTTCTGTTAACAAGAGCTGCTTCAGTGGACACAAGTGGCATATTGGTATTGACA AACCCAGGACAACTCCATTTTTATGATAGTACTTGCTTGTCTGTCTTGATGTCAAAGGAAGAGAAAAAGTCTACTGTGTCTCCAATTGAATATCCCATGG CCATACCTACTGTCGAGCCGAACATGACTGCTGGAAAGCTTGGTTTGGTATGTAAAGATGGACATCTTTCAAAGGTTTTGTCTGAGAAGCTCTCTTCTGC AAAGCTGAGAAACCTCGACAGTTCCGCAAATACTAATTGGCCTTTGACTGGTGGTATTCCAAGTGAACTTTTGGTTGGAGAAGATTATCAAGTTGAAAGA ATTTATATAGCAGGCTATCAAGATGGATCTGTTAGAATATTTGATGCAACGTGTCCAACCTTTTCATTAGTTTGTGTCTTAGGACCTGAGATTAAAGGTG CACGTATTGTTGGTGCAAGTGCACCAGTATTTGCGTTGGATATTTGCTCCTTCACGTTGACTTTGGCTATTGGCAATGAACTTGGTAACGTACTTTTATA CAGTTTCACCAGGAATACCGATGCAACACAATTAAATTTTGTTACAGAAAATGGAAAAGAAGTCCACACATTACAAGGAAAAGATGAGCCTCACTGCACA GCCGTGTTTTCCTTCCATACTTCCCCTATAACCACTCTTCAGTTTGTGAATTCTGGATCCAAACTTGCTGTTGGATTTCACTCTGGAAGGGTGGCACTGC TTGATATTAACACATCTTCGGTGTTGTTTCTTACTGATAGTGTGTCCAAATCGGGTTCCCCAATCAAATCTCTGGAAATGAGACCATTTATGGAAACTGC TAGTATGATACCAGAGGAGAGCCGATCCAAATCTATGAAGAACAATGTCAACTGGAAAGTTTTTGTTGTGACCAAGGATGGACAGTTTGTACTTATTGAC GGAAACACAGGGAACATTATCTTTTCTCACTTATTGAAAGCGGAAGAGGAAATGATTGTTGTTTCAACTTATGTTATAGGCAGTAGCAACTGTACATCTT GCTCATCTGAGAACCGTGAGGCAGAAAGCAATTCTGTTCAATCCACCACCCCTGATGGGAGCCTTAACCCAGTGAATGCAGATCTAGAAGTCTCTTCAGG AGCTGCTGGTTATGAGAAGCCAGCTGAGAGTTTTCTCCTTGTGCTTTGTTCAGAGAATGCTTTGTATATATACTCCGTCAATGCTCTTAAAGAGGGAGAT ACCCACCCTGTTCAAAGAGTGAATTTTTCAAAGCTATGCTGTTATACTAGCACTTTCAAGAAGGATGACAAAGATGTTGGACTCATTATAATTCACCAGA CTGGGGAAATTGACGTGAGGTCTTTCCCTGACTTTAAATTGGTGGGTGAAAGCTCTTTAAAGTCAATTCTGCGGTGGAACTTCAAGACTAATATGGAGAA GACAATATGTTCCTCCCAAAATGGCCAGATTATCTTGGTCAATGGGTGTGAGGTTGCTTCAATCTCTCTTTTGGCCTTTGAAAATGACCTCAGGATTCCA GATTCTTTACCTTTTCTTCATGACAAAGTGCTCGAAGCTGCTATTGACGCTACTGAAAATCTATCTCCAAATAAGAAGGATAAACAAGGTTCTTTGCCTG GTATCATTGGTGGCATCCTTAAGGGCTTCCATGCAGGTAAGGTGGAGGACCAGAAAGTGAGTTTCCCAGAGGTTGGTAAAAGCAATTTGGCACATCTTGA TGTCATATTTTCCAATCCCCCATATCTGAAGCCTTCTATGGACTTCCCCGATGATGCAAATGATGTTGTGGAGCTCAGCATAGATGATATCGACCTCGAT TTCAATGAACACGTGGTAGTTACATCTACGACTGAGAAGAAGAACAATGATGAGAAAGACAAGGGAAAGGAAAGAGAGAAGCTATTTGAAGGTGGGACGA GTGATTCAAAGCCCACAATGAGAACAGTAGAAGAAATCAAGAAGAAATATGGGAAGGAGGATGCTGCTGGAGCAGCTGCACTCGCAAGGGACAAGCTTGC TGAGCGTGGGGAAAAACTCGAGAGGCTGAGCCTGCGAACTGAGGAGCTGCAGAACGGGGCTGAAAATTTCGCATCACTTGCACAGGAGCTCGCTAAGCGA ATGGAGAAGCGCAAATGGTGGCAGTTATGA
AA sequence Show only first row Show all	>Lus10037841 pacid=23163842 polypeptide=Lus10037841 locus=Lus10037841.g ID=Lus10037841.BGIv1.0 annot-version=v1.0 MFTKLFHKNADAGEQPSSSAQDNASKGILSSKDINPRVNLHYGIPSTASVMAFDPIQSLLALGTLDGRIKVIGGDNIEGLMVSPKQLPFKYLEFLQNQGF LVSVSSENEIQVWDLEHRRMASSLRWESSITAFSAIHGSSYMYVGDEYGMVYVVKYNAEDMSLVPLPYYVPTSAIDEASGGPSSDQHSVVGVLPQPSSCG NRLHNSPSFCRVLIAYDNGLLILWDVSEDKVIVVKGNKDLQLKSKIAVNSQEEVRQEPSDDEQLDKEISALCWTSGSGTVLAVGYVDGDIMLWNLSTTVP SRDNNVVKLQLSSDDRRLPVIILHWYPKKSRDDCGQLFVYGGDAIGSEEVLTILNLDWSAGIGNLKCIGRTDITLNGSFADMVLLTRAASVDTSGILVLT NPGQLHFYDSTCLSVLMSKEEKKSTVSPIEYPMAIPTVEPNMTAGKLGLVCKDGHLSKVLSEKLSSAKLRNLDSSANTNWPLTGGIPSELLVGEDYQVER IYIAGYQDGSVRIFDATCPTFSLVCVLGPEIKGARIVGASAPVFALDICSFTLTLAIGNELGNVLLYSFTRNTDATQLNFVTENGKEVHTLQGKDEPHCT AVFSFHTSPITTLQFVNSGSKLAVGFHSGRVALLDINTSSVLFLTDSVSKSGSPIKSLEMRPFMETASMIPEESRSKSMKNNVNWKVFVVTKDGQFVLID GNTGNIIFSHLLKAEEEMIVVSTYVIGSSNCTSCSSENREAESNSVQSTTPDGSLNPVNADLEVSSGAAGYEKPAESFLLVLCSENALYIYSVNALKEGD THPVQRVNFSKLCCYTSTFKKDDKDVGLIIIHQTGEIDVRSFPDFKLVGESSLKSILRWNFKTNMEKTICSSQNGQIILVNGCEVASISLLAFENDLRIP DSLPFLHDKVLEAAIDATENLSPNKKDKQGSLPGIIGGILKGFHAGKVEDQKVSFPEVGKSNLAHLDVIFSNPPYLKPSMDFPDDANDVVELSIDDIDLD FNEHVVVTSTTEKKNNDEKDKGKEREKLFEGGTSDSKPTMRTVEEIKKKYGKEDAAGAAALARDKLAERGEKLERLSLRTEELQNGAENFASLAQELAKR MEKRKWWQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	0	1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	2.0	0.9334
AT1G58230			binding (.1)		Lus10042866 [exp]	3.7	0.9202
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	3.9	0.9016
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	4.2	0.9157
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	5.5	0.8999
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	6.0	0.8933
					Lus10029801 [exp]	7.3	0.8575
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	7.5	0.8848
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	7.7	0.9053
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	8.0	0.8940

Compare expression of checked genes

Lus10037841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.