Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08335 294 / 2e-102 ATICMTB, ATSTE14B ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) AT5G23320 258 / 3e-88 ATICMTA, ATSTE14A, ATPCM LPHA-CARBOXYL METHYLTRANSFERASE, ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE A, homolog of yeast STE14 A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030398 [exp] 387 / 2e-138 AT5G08335 285 / 2e-98 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089500 [exp] 305 / 8e-107 AT5G08335 285 / 4e-99 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) Potri.007G074500 [exp] 301 / 1e-105 AT5G08335 298 / 4e-104 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF04140 [flax] [poplar] ICMT Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Representative CDS sequence Show only first row Show all	>Lus10037842 pacid=23163913 polypeptide=Lus10037842 locus=Lus10037842.g ID=Lus10037842.BGIv1.0 annot-version=v1.0 ATGGCAGAGTTTATCAGTCACACAGGCTACAGGCAGCTGTCCCAAATGTTTCTAGCTATTCTTTTCTTCCATAGTTCGGAATACATTCTTGCTGTTTGGG CACACGGGAAATCAAAAGTTACTTTGAGTTCACTTCTGATCAGTAAAGGCTATCTTGTAGCCATGGTATTTTCAGTATTGGAGTACTCAGTTGAGATGCG GCTGTTTCCTGGACTTAAAGAACATTGGTGGATTAGCAACTTTGGCCTTGCTATGGTTGCTGTTGGGGAACTGATACGGAAACTGGCCATTATAACTGCT GGGGGAGCTTTCACACATCTCATCAGGACTCGTCACGAAGAGCAGCATAAGCTGGTTACTTATGGAGTCTATAGTTTTGTCCGGCATCCTAGTTATTTGG CTTTCCTCGTATGGTCTGTGGGTACCCAGATAATGCTGTGCAATCCTGTCTCCGCCATTGGGTTTGCTGTTGTCGTGTGGCGTTTCTTCTCGCATCGGAT ACCGTATGAGGAGTTCTACTTGCGACGGTTTTTCAGGTCAGAGTATGATGAATATGCTCTACGAACACCTTCTGGGGTTCCGTTTGTGAAGTGA
AA sequence Show only first row Show all	>Lus10037842 pacid=23163913 polypeptide=Lus10037842 locus=Lus10037842.g ID=Lus10037842.BGIv1.0 annot-version=v1.0 MAEFISHTGYRQLSQMFLAILFFHSSEYILAVWAHGKSKVTLSSLLISKGYLVAMVFSVLEYSVEMRLFPGLKEHWWISNFGLAMVAVGELIRKLAIITA GGAFTHLIRTRHEEQHKLVTYGVYSFVRHPSYLAFLVWSVGTQIMLCNPVSAIGFAVVVWRFFSHRIPYEEFYLRRFFRSEYDEYALRTPSGVPFVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10037842 [exp]	0	1
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	3.9	0.8989
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	13.3	0.8825
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	15.4	0.8624
AT5G40810			Cytochrome C1 family (.1.2)		Lus10041577 [exp]	16.8	0.8866
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	19.5	0.8797
AT3G60540			Preprotein translocase Sec, Se...		Lus10037570 [exp]	21.7	0.8711
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	23.6	0.8835
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	23.7	0.8683
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10042366 [exp]	27.1	0.8784
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	28.0	0.8740

Compare expression of checked genes

Lus10037842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.