Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40170 129 / 6e-41 GEA6, ATEM6 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1) AT3G51810 110 / 2e-32 AT3, GEA1, ATEM1 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030394 [exp] 173 / 5e-58 AT2G40170 128 / 2e-40 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1) Lus10027816 [exp] 129 / 3e-40 AT3G51810 155 / 8e-50 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) Lus10005044 [exp] 129 / 3e-40 AT3G51810 155 / 8e-50 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) Lus10000125 [exp] 76 / 6e-20 AT3G51810 89 / 1e-24 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187100 [exp] 140 / 5e-45 AT2G40170 132 / 6e-42 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0385 [flax] [poplar] Hydrophilin PF00477 [flax] [poplar] LEA_5 Small hydrophilic plant seed protein
Representative CDS sequence Show only first row Show all	>Lus10037844 pacid=23163733 polypeptide=Lus10037844 locus=Lus10037844.g ID=Lus10037844.BGIv1.0 annot-version=v1.0 ATGGCATCAAAGCAGCAGAGCAGGGAGGAGCTGGACGAAAAGGCAAGGCGTGGGGAGACAGTAGTCCCAGGTGGCACCGGCGGGAAGAGCCTCCAAGCCC AGGAGAATCTTGCTGAAGGGAGGAGCAAAGGAGGGCAGACGAGGAAGGAGCAGCTAGGGAGTGAAGGGTACCAGGAGATGGGGAGGAAGGGCGGGATGAG CACCGCGGAGGAATCCGGCGGAGAGCGAGCCCAGAGGGAAGGGGTCGACCTAGATGAGTCCAAGTACACCACCAAATAA
AA sequence Show only first row Show all	>Lus10037844 pacid=23163733 polypeptide=Lus10037844 locus=Lus10037844.g ID=Lus10037844.BGIv1.0 annot-version=v1.0 MASKQQSREELDEKARRGETVVPGGTGGKSLQAQENLAEGRSKGGQTRKEQLGSEGYQEMGRKGGMSTAEESGGERAQREGVDLDESKYTTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40170		GEA6, ATEM6	LATE EMBRYOGENESIS ABUNDANT 6,...		Lus10037844 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10026586 [exp]	1.0	0.8544
					Lus10006005 [exp]	21.7	0.7928
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	21.9	0.7624
					Lus10011203 [exp]	38.8	0.7604
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10040396 [exp]	74.7	0.7046
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10014241 [exp]	148.2	0.7325
					Lus10010246 [exp]	240.6	0.7151

Compare expression of checked genes

Lus10037844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.