Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00490 681 / 0 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G45880 606 / 0 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 480 / 4e-163 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G32290 423 / 1e-142 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G15210 414 / 4e-140 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G17090 395 / 4e-132 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 382 / 2e-126 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 290 / 1e-91 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 204 / 5e-59 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030392 [exp] 935 / 0 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10018842 [exp] 590 / 0 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10035679 [exp] 492 / 4e-167 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10017820 [exp] 467 / 4e-161 AT2G45880 551 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10018491 [exp] 420 / 3e-141 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039701 [exp] 417 / 3e-139 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 400 / 2e-134 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10011035 [exp] 383 / 3e-127 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 378 / 4e-125 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083800 [exp] 768 / 0 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.002G159300 [exp] 654 / 0 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 649 / 0 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.003G106500 [exp] 503 / 2e-172 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.017G040800 [exp] 407 / 2e-136 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 394 / 1e-131 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 389 / 4e-129 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 384 / 3e-127 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G085500 [exp] 377 / 4e-125 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 296 / 5e-93 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10037846 pacid=23163923 polypeptide=Lus10037846 locus=Lus10037846.g ID=Lus10037846.BGIv1.0 annot-version=v1.0 ATGCCGATTTCCGCTGGCCGTCTTGCCGACGGCTTTAGGTCTTGCGGCTTAGCTTCTGCTGGACTGACTCCGCGGTCGCCTTTTGTTTCTCCATCTCGTG GTTCACTGTCACAATCGAGCAGCTGGCTGCGTTTGGATCACGATGCCGGCCGTTTGGCATTCGATGGTCGGCCCCGGAAGTCTGCTGTTGTGATCGGCAG CGGGAAGACGATTGGCGATCATCCGTCTGTTGACGAGTCTGCCGACGACAGTACTGACGACGACGAGCAGGTTTTAGAAGTTCGTCCAAAAGTACCGGAG CGTGACTTTACTGGCACAGCCTATGTTCCCGTATACGTTATGTTACCTCTTACAGTTTGTGTCACGTACTTTTTGGGGTTGGGATGGTGGGGCTGGCAGC TGAATGTTATAGACATGAATTGCCAGTTGATTGATCGTGACGGCCTTACAAACTATCTGAAGATCTTGAAATCAGCTGGTGTTGATGGAGTTATGGTGGA TTGCTGGTGGGGAATAGTGGAAGGCGATGCTCCACAGGTGTACAACTGGAGTGGCTATAAGGAACTCTTTAAGATTGTGCGTGACCTCAAGCTTAAGCTG CAGGCTGTGATGTCGTTTCATGAATGTGGTGGTAATGTTGGGGACGACGTATTCATTCCTCTTCCTCGTTGGGTGATAGAAATTGGTGAAAGCAATCCTG ACATATATTTCACGGATAGAGGAGGAAGGCGCAATAATGAGTGCCTCACATGGGGTATTGACAAGGAACGGGTTTTAAAAAGCAGAACTGCTCTTGAGGT TTATTTCGACTACATGAGGAGCTTTAGGGTAGAGTGTGATGAATTCTTTCAAGATGGAATAATCTCTGAAATTGAAGTGGGATTGGGCCCATGTGGAGAG TTGCGCTATCCTTCATATCCAGCAAAGCATGGTTGGAGATATCCTGGCATTGGTGAATTTCAGTGTTATGATAAGTACTTGATGAAGAGTCTGGGGAAGG CAGCAGAAATCAGGGGGCACTCATTTTGGGGAGGAGCTCCAGGGAATGCAGGCTCTTATAATTCTCCACCCCATGAAACTGGATTCTTTCGTGATGGGGA TCATGGAGATCGTGTACTTGCCCTCGCTAATTTGGCTTTCGAAGGCACTAAAATTTCAGCTAAGTTATCAGGTATACATTGGTGGTACAAAACTGCTAGT CATGCTGCCGAACTAACTGCTGGATTCTATAACCCCTCAAACCGTGATGGATACGCCCCAATCGCAACAATGCTAAAGAAGCATGGTATCACTCTGAACT TCACTTGTTTTGAGATGCGCACACTGGATCAGTTTGAGGGATTTCCCGAGGCTATGGCGGATCCTGAAGGACTAGTTTGGCAGGTACTGAATGCTGCATG GGATGTATCCTTGCCTGTTGCCAGTGAGAATGCTCTTCCATGCTACGACAGAGAAGGTTACAACAAGATATTAGAAAACGCAAAGCCACTGCATGATCCA GACGGTAGGCATTTATCAGCATTCACTTATCTCAGGCACAGCTCAGCTCTTATCGAGAGGCGCAACTTCGAGGAATTCGGAAGATTCGTTAAGAGAATGC ATGGTATGCCGTCCCTTCTCGTTCCCTATTAG
AA sequence Show only first row Show all	>Lus10037846 pacid=23163923 polypeptide=Lus10037846 locus=Lus10037846.g ID=Lus10037846.BGIv1.0 annot-version=v1.0 MPISAGRLADGFRSCGLASAGLTPRSPFVSPSRGSLSQSSSWLRLDHDAGRLAFDGRPRKSAVVIGSGKTIGDHPSVDESADDSTDDDEQVLEVRPKVPE RDFTGTAYVPVYVMLPLTVCVTYFLGLGWWGWQLNVIDMNCQLIDRDGLTNYLKILKSAGVDGVMVDCWWGIVEGDAPQVYNWSGYKELFKIVRDLKLKL QAVMSFHECGGNVGDDVFIPLPRWVIEIGESNPDIYFTDRGGRRNNECLTWGIDKERVLKSRTALEVYFDYMRSFRVECDEFFQDGIISEIEVGLGPCGE LRYPSYPAKHGWRYPGIGEFQCYDKYLMKSLGKAAEIRGHSFWGGAPGNAGSYNSPPHETGFFRDGDHGDRVLALANLAFEGTKISAKLSGIHWWYKTAS HAAELTAGFYNPSNRDGYAPIATMLKKHGITLNFTCFEMRTLDQFEGFPEAMADPEGLVWQVLNAAWDVSLPVASENALPCYDREGYNKILENAKPLHDP DGRHLSAFTYLRHSSALIERRNFEEFGRFVKRMHGMPSLLVPY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	0	1
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	11.5	0.7459
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	11.6	0.7548
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000551 [exp]	11.7	0.6641
AT1G72200			RING/U-box superfamily protein...		Lus10028454 [exp]	13.0	0.6967
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	17.5	0.6521
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	21.7	0.7324
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10020905 [exp]	24.9	0.7063
AT2G40770			zinc ion binding;DNA binding;h...		Lus10030512 [exp]	25.5	0.7016
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	28.5	0.7148
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	29.2	0.6966

Compare expression of checked genes

Lus10037846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.