Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00500 595 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G49050 592 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G37710 453 / 1e-157 alpha/beta-Hydrolases superfamily protein (.1) AT2G42450 79 / 1e-15 alpha/beta-Hydrolases superfamily protein (.1) AT3G14075 73 / 1e-13 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT4G16070 70 / 1e-12 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030391 [exp] 714 / 0 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039240 [exp] 548 / 0 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 547 / 0 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000445 [exp] 284 / 2e-93 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10010983 [exp] 283 / 6e-93 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000444 [exp] 150 / 1e-43 AT5G37710 191 / 5e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10005809 [exp] 117 / 5e-31 AT5G37710 144 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) Lus10013158 [exp] 81 / 5e-16 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 81 / 5e-16 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083600 [exp] 644 / 0 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 633 / 0 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G142700 [exp] 590 / 0 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 560 / 0 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 473 / 7e-165 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 450 / 3e-156 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G222000 [exp] 79 / 2e-15 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 79 / 2e-15 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 67 / 8e-12 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 66 / 3e-11 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10037847 pacid=23163781 polypeptide=Lus10037847 locus=Lus10037847.g ID=Lus10037847.BGIv1.0 annot-version=v1.0 ATGTCAATTGCCTGTTGCATTCCGGTTGTTGAATGCGTCTACTGCCTCGCCTGCGTACGCTGGGCATGGCGAAGGTGCATCTACACAGCAGGCTACGAAA GCCAGAACTGGGGGCTAGCTACTGCCGAAGAGTTCGATCCAGTCCCACGGCTATGTCGAATCATACTCGCAAACTACGAGGACGATCTTCGTAACCCCAT TTGGGAGCCTCCGGGCGGCTACTGTCTCGATCCGGATTGCTTGATGTTAAAGAAGAGTCATGAACACACGGGTGGCCGATCGAGTCCTTATTTGATCTAC ATCGATCACAGGAATGCTGATGTTGTGTTGGCTATTAGAGGGCTTAATTTGGGTACTGAGAGTGATTATGCTGTCTTGCTTGATAACAAGCTTGGACAGA CTAAATTTTGCGGAGGGTATGTCCATAACGGTCTTTTAAAGGCTGCGAAGTGGGTTTTCGATACGGAATGTGAGGTTTTAAGAGAGTTGCTGGAGCAGAA TCCGGATTATCAGTTGACGTTTGCTGGACATTCGTTAGGTGCCGGGATAGTTGCGTTGTTGACGATCTATGCTCTTCAGAATCGAGATAGGTTGGGGAAT ATTGAAAGGAAGAGGATCAGGTGCTTTGCCATAGCTCCTCCTAGGTGCATGTCTTTGAACTTGGCTGTCAGATATGGTGATGTTATCAACTCTGTCGTGC TTCAGGATGATTTTCTACCTCGTACAACCATGGCTTTGGAAGACGTGTTTAAGTCGCTTATCTGTTTCCCTTGTCTGCTTTGCATAATGTGCTTGAAGGA CACTTGCACTCTTGAGGAAAAGAAGCTTAAGGACCCTAGGAGGCTATACGCACCTGGTCGCCTTTACCACGTTGTCGAGAGAAAGCCACTCAGGATGGGG AGATATCCTCCGATTGTCCGGACAGCAGTCCCGGTGGACGGTAGGTTCGAGCACATAGTTCTGTCGTGCAATGCAACTGCCGACCATGCCATTATCTGGA TCGAAAGGGAATCTCAGAGAGCTCTTGATATAATGCTCTCGAATGACCGGATGACAGAGATCCCAGTAGAGCAGCGAATGGAGAGGAAGGAGTCCTTGGC ACGAGAACAAACCCAGGAATACGAAGCAGCTCTGCAACGAGCTGTTGCTTTAGACATCCCTATTGCATCGGCTTCTCCCTATGGCACGTTTGCCGATACA GAAGGAGAAACCTCCGGTGGAAGCTCGTCGGGACCTGCTACTTCGTCATCGTGGTCGTTCAGGAAAATGAGGGATAGACTCGATAGTTTCGTCGACCGTT TCTTTGATGTTGATGACTTTGGCCACATGGTGTTCAAGAACTCTGTCTTGTAA
AA sequence Show only first row Show all	>Lus10037847 pacid=23163781 polypeptide=Lus10037847 locus=Lus10037847.g ID=Lus10037847.BGIv1.0 annot-version=v1.0 MSIACCIPVVECVYCLACVRWAWRRCIYTAGYESQNWGLATAEEFDPVPRLCRIILANYEDDLRNPIWEPPGGYCLDPDCLMLKKSHEHTGGRSSPYLIY IDHRNADVVLAIRGLNLGTESDYAVLLDNKLGQTKFCGGYVHNGLLKAAKWVFDTECEVLRELLEQNPDYQLTFAGHSLGAGIVALLTIYALQNRDRLGN IERKRIRCFAIAPPRCMSLNLAVRYGDVINSVVLQDDFLPRTTMALEDVFKSLICFPCLLCIMCLKDTCTLEEKKLKDPRRLYAPGRLYHVVERKPLRMG RYPPIVRTAVPVDGRFEHIVLSCNATADHAIIWIERESQRALDIMLSNDRMTEIPVEQRMERKESLAREQTQEYEAALQRAVALDIPIASASPYGTFADT EGETSGGSSSGPATSSSWSFRKMRDRLDSFVDRFFDVDDFGHMVFKNSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	0	1
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	1.0	0.8969
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	4.2	0.8108
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	4.5	0.8326
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	8.9	0.8154
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	9.3	0.8284
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10017470 [exp]	10.0	0.7638
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	14.1	0.7915
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	16.7	0.7839
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10032795 [exp]	18.2	0.7543
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	21.0	0.7952

Compare expression of checked genes

Lus10037847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.