Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15570 293 / 6e-96 Phototropic-responsive NPH3 family protein (.1) AT1G52770 272 / 1e-87 Phototropic-responsive NPH3 family protein (.1) AT5G64330 165 / 5e-45 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G03250 135 / 4e-35 Phototropic-responsive NPH3 family protein (.1) AT5G13600 134 / 2e-34 Phototropic-responsive NPH3 family protein (.1) AT1G30440 134 / 3e-34 Phototropic-responsive NPH3 family protein (.1) AT2G14820 132 / 8e-34 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT5G67385 132 / 8e-34 Phototropic-responsive NPH3 family protein (.1) AT5G48800 130 / 2e-33 Phototropic-responsive NPH3 family protein (.1) AT1G03010 126 / 1e-31 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030390 [exp] 428 / 9e-150 AT3G15570 241 / 2e-75 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 144 / 6e-38 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 141 / 7e-37 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 140 / 1e-36 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 138 / 1e-35 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 137 / 1e-35 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 137 / 2e-35 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 134 / 1e-34 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 134 / 2e-34 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058800 [exp] 301 / 3e-99 AT3G15570 499 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.001G175400 [exp] 285 / 6e-93 AT1G52770 507 / 8e-179 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 168 / 2e-46 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 166 / 1e-45 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.010G223600 [exp] 150 / 4e-40 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 149 / 1e-39 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G075400 [exp] 147 / 7e-39 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 144 / 4e-38 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 142 / 2e-37 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 142 / 3e-37 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10037848 pacid=23163703 polypeptide=Lus10037848 locus=Lus10037848.g ID=Lus10037848.BGIv1.0 annot-version=v1.0 ATGACGTCATCGCTGATGAAGAAAAGATTCTTCGTGGAGACGCTGGTGGGGATTCTCCCGGGGGAGAGAGACTCGGTGCCTTGCAATTTCTTACTGCGGC TGCTCCGTACGGCTAACATGGTGGGAGCCGAGCCGGGGTGCGTAGCCGAGCTGGAGGCGAGGGCGGCGCGGCAGGCGGCCGGCCCGCTGGTGGGGGGGAA GGAGCTGATGATTCCTTCGTTTAGCAATTACACGTGCGGGAGCACGGTGCTCGACGTGGAGCTCGCGACTCGGCTGGTGAAGATGTGTGTCGGTAGTAAG GCGGCGGCGGAGGCGGCGGGGAAAGTGGGGAAGCTGGTGTATGGGTACCTGGCGGAGGTGGCGGTGGATCCGAACCTGGGGCTTTTGGAGTTTGTGTCTC TTGCTGCAGCGGTTCCTCACCATGCCCGTACGATCGACGATGGGCTCTACCGTGCTATCGATACTTATCTCAAAGCACATCCAGGGGTGTCAAAGCATGA GAGGAAGAGCCTGTGCAGGCTAATAGACAGCAGGAAGCTCTCACCAGAGGCATCCTACCACGCTTCCCACAACGAAAGGCTACCGGTTCGAGTCGTGATC CAAGTCCTCTTCGCCGAGCAAACCAAGCTCACAAGGCAACTCGACTGGAGCAGCGGCTCCTTCAACAACGACCTAAACCTCATGACTCGTTCGAGCCCCA ACCCTCGGTCTTACAACAACAACAACATGGACCATCAAGACCCATCGACCCGATGCCACTCGAAGCGGGAGGTGAACGCGCAGAATTCGGAGATCAGGAA GCTGAAGGAAGACGTGGTGAGGCTGCAGAGCCAGTGCCTCAGCATGCAGAGCCAGATGGGGAGGCTGATGGCTGACCAGAAGAAGAAAAACAACGGTGGG CATCATCATGTGTTTAGCTACTGGAAGAAGTTAGGGTTCTCATCAACAACTTTCAAAGCTAACTCAAGTGATCAGATGAAGGTGGTTGATCAATTGAATG AAGGATTGAGATCAGATCATCATGGAGAAGTTGTTATGGGAAAGGAAACTCCAGTTGTTGACAATATCAAGGCCAAACTTGTCAAGAAGAGGACTCCTCC TCACAGGTGGAGAAAATCCATGTCTTGA
AA sequence Show only first row Show all	>Lus10037848 pacid=23163703 polypeptide=Lus10037848 locus=Lus10037848.g ID=Lus10037848.BGIv1.0 annot-version=v1.0 MTSSLMKKRFFVETLVGILPGERDSVPCNFLLRLLRTANMVGAEPGCVAELEARAARQAAGPLVGGKELMIPSFSNYTCGSTVLDVELATRLVKMCVGSK AAAEAAGKVGKLVYGYLAEVAVDPNLGLLEFVSLAAAVPHHARTIDDGLYRAIDTYLKAHPGVSKHERKSLCRLIDSRKLSPEASYHASHNERLPVRVVI QVLFAEQTKLTRQLDWSSGSFNNDLNLMTRSSPNPRSYNNNNMDHQDPSTRCHSKREVNAQNSEIRKLKEDVVRLQSQCLSMQSQMGRLMADQKKKNNGG HHHVFSYWKKLGFSSTTFKANSSDQMKVVDQLNEGLRSDHHGEVVMGKETPVVDNIKAKLVKKRTPPHRWRKSMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10037848 [exp]	0	1
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	2.4	0.7431
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10037239 [exp]	12.7	0.7172
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10002960 [exp]	14.8	0.7419
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10006347 [exp]	14.9	0.7719
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	16.7	0.7112
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	22.4	0.7422
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10029274 [exp]	23.2	0.7342
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	39.6	0.6829
AT2G02410			unknown protein		Lus10042400 [exp]	40.6	0.7342
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	42.7	0.6871

Compare expression of checked genes

Lus10037848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.