Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61320 445 / 1e-155 Bestrophin-like protein (.1) AT2G45870 443 / 9e-155 Bestrophin-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030389 [exp] 681 / 0 AT3G61320 496 / 1e-175 Bestrophin-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082900 [exp] 511 / 0 AT3G61320 455 / 3e-159 Bestrophin-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01062 [flax] [poplar] Bestrophin Bestrophin, RFP-TM, chloride channel
Representative CDS sequence Show only first row Show all	>Lus10037849 pacid=23163893 polypeptide=Lus10037849 locus=Lus10037849.g ID=Lus10037849.BGIv1.0 annot-version=v1.0 ATGTCCCGCCAAATCAATTCCCACTCTTCACTCCCCAATTTCTCCATCTCCTCCTCCGATTACCTCATCCGACTCCGCCACAACCACCCCCACCGCCACC TCTCCTTCAAATCTCTTTCGTCATCCAACTCCCCGCCGCCGGGAAACCACAGCCCTTCCAAATCCCTAATCTCCCTCCTCCGAGTAATCCCCGACTGGTC CGACAGGATCAAGGAGCGCGGCATGCGCAAAACCCGCACCCTCTACAACCACGACAAATGGATCGAGCACCGTAGCTCTCTCCGCCACGTCCGCCACCTC CTCTCCAGTTTGTCCTCGCGAGTCATCCTGTCGTTGATTCCGCCTGTAATCGCTTTCACTCTCGTCGCTGTAATCGTCGCCGGTTACAACACCGCCGTGG AGCTCCATTCCTTGCCTGCGTTTTTACCCGTCCTCAGGGCTTCCACGCTGCCGTATCAGCTCACTGCTCCCGCTTTGGCGCTGCTGCTTGTGTTCAGGAC GGAGGCTTCTTACTCTAGGTTTGAAGAAGGGAGGAAAGCCTGGACTAAGGTCATTTCCGGGACGAATGAATTCGCTAGGCAGATCATTACCGGTGTTGAT GAGTCCAGAGATTCTATACTTAAGAGTGCGCTTTTGAAGTATGTTATGGCCTTCCCCATCGCGCTTAAGTGCCATGTGATCAATGGTTCAGACGTTCGAC AAGATCTCAAGAATGTGTTGGAAGTAGACGATCTTGCACTGGTGATGGATTCTAGGCATCGACCTCGCTGCATCATCGCGTTGATTTCGCAAAGCCTTAG ACTACTGAGCCTGGAAGAAACCAAGAGAAATCTGCTGGAGGCCAAGCTTTCTTGTTTCCATGAGGGACTTGATGTATGTGAAGAGCTTATAGGCATTCCC ATTCCGCTTTCATATACTCGCCTAACGTCAAGATTTCTAGTCCTTTGGCATCTCACCCTTCCTATAATCCTTTGGGAGGATTGCCATTGGATTGTTGTTC CCGCTACGTTCATCAGTGCTGCTTCCTTGTTCTGCATCGAGGAGGTCGGTGTTCTTATCGAGGAACCATTTCCAATGTTGGCTCTTGACGCGCTCTGCAA TCTAGTTTGCCAAAACGTTGAGGAAGCCGTTTCATCGGACAAAGGCATTCAAGCGCATCTTATCTCGAAAAGGAAGAGCCGTTCCATTGAGCACTCAACA AACGGTTGGCCTAAATCTTGA
AA sequence Show only first row Show all	>Lus10037849 pacid=23163893 polypeptide=Lus10037849 locus=Lus10037849.g ID=Lus10037849.BGIv1.0 annot-version=v1.0 MSRQINSHSSLPNFSISSSDYLIRLRHNHPHRHLSFKSLSSSNSPPPGNHSPSKSLISLLRVIPDWSDRIKERGMRKTRTLYNHDKWIEHRSSLRHVRHL LSSLSSRVILSLIPPVIAFTLVAVIVAGYNTAVELHSLPAFLPVLRASTLPYQLTAPALALLLVFRTEASYSRFEEGRKAWTKVISGTNEFARQIITGVD ESRDSILKSALLKYVMAFPIALKCHVINGSDVRQDLKNVLEVDDLALVMDSRHRPRCIIALISQSLRLLSLEETKRNLLEAKLSCFHEGLDVCEELIGIP IPLSYTRLTSRFLVLWHLTLPIILWEDCHWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDALCNLVCQNVEEAVSSDKGIQAHLISKRKSRSIEHST NGWPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61320			Bestrophin-like protein (.1)		Lus10037849 [exp]	0	1
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	2.2	0.8524
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	8.1	0.8192
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	8.4	0.7786
AT1G13360			unknown protein		Lus10034310 [exp]	8.9	0.8059
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	9.5	0.8271
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	10.8	0.7787
AT1G12440			A20/AN1-like zinc finger famil...		Lus10007015 [exp]	12.0	0.7806
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	12.0	0.7875
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	17.0	0.7954
AT5G64230			unknown protein		Lus10033177 [exp]	17.2	0.7807

Compare expression of checked genes

Lus10037849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.