Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20960 430 / 1e-149 Cytidine/deoxycytidylate deaminase family protein (.1) AT3G47390 115 / 4e-28 PHS1 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030388 [exp] 715 / 0 AT4G20960 422 / 7e-147 Cytidine/deoxycytidylate deaminase family protein (.1) Lus10026832 [exp] 110 / 2e-26 AT3G47390 876 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10020208 [exp] 109 / 8e-26 AT3G47390 885 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10041104 [exp] 101 / 5e-23 AT3G47390 791 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10036431 [exp] 99 / 4e-22 AT3G47390 870 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158800 [exp] 484 / 3e-171 AT4G20960 422 / 6e-146 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.014G083000 [exp] 283 / 1e-95 AT4G20960 272 / 6e-91 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.019G054000 [exp] 104 / 3e-24 AT3G47390 935 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10037850 pacid=23163760 polypeptide=Lus10037850 locus=Lus10037850.g ID=Lus10037850.BGIv1.0 annot-version=v1.0 ATGGCCAGCTCACCTCGCTTGAGAAGAATAACAGGTGGGTTGAATCTGAAGTGTCGAGGGGAACTTGTTGAAGGACATAATGGAGGCAAAGATGACGGGT TTTACATTAGGAGGTGTGTGGAGATCGCTAGGAAGGCGATTGGACGGACAAGCCCCAATCCAATGGTGGGCTGTGTGATTGTCAAGGATGGTGAAATCGT CGGAGAAGGTTTCCATCCTAAAGCCGGCCAGCCTCATGCTGAGGTATTTGCTCTTAGAGATGCTGGATCGTTGGCTGAGAATGCTACAGCTTACGTGAGC TTGGAACCTTGCAATCACTATGGAAGAACTCCACCATGCACTGAAGCTCTTATCAATGCCAAAGTGAAGAAGGTGGTGGTTGGGATGGTTGATCCAAACC CAATTGTGGCTTCTAAAGGAGTGGAAAAATTGAGAGGTGCTGGGATAGATGTAACAGTTGGTGTGGAGGAAGAACTCTGCTGGCGACTCAATGAGTCCTA TATTCATAAGATGCTGACAGGGAAACCTTTCGTCACAATTAGATATTCTATATCTCTGAACGGCAACGTTATGAACCAAACCGGAAGAGGAGTCACGGAA ACCGGGGGATACTACTCCAGATTGTTGCAGGAATACGATGCGGTTGTTCTTTCCGCTTCTTCAACCGAGCATATGTCCCTTCCAGTTTCACAGGAACCTG GTGCTAGTCAACCCCTTTGGATAATAACAGCAAACTCTCCTTCTCCAGTCCATATCTCACCTCTGGACGAAGAGTTGGATTCTAAAGTGATTGTCTTTGC AGACGAAGAATCCACCGCTGGACCTGGTATTAGTCATAAAGGAATCGAGACTGTGGTACTGGATCAGATGAATCTGGATGCTGTTCTGGAGTACTGTAAC CAGCAGGGTCTGTGTAGTGTCCTTCTGGATTTGAGGGGTAGTTTTGGGATTCGAAAGCTTGTTGAGGACGGTATGGAGCAAGGCTCGGTGCAGAAGATTG TTGTCGAAGTACTTCCTGTTTGGAATGGAAATAGCGACGATTCTGATTCTCTTGCTGCGTTGAAGACCGTGTCAAAACGCATAGAGCTGAAGAATTTACA GGCCAATAACTCCAGTGGAAGCATCGTCCTAGAGGGTTACCTTTAG
AA sequence Show only first row Show all	>Lus10037850 pacid=23163760 polypeptide=Lus10037850 locus=Lus10037850.g ID=Lus10037850.BGIv1.0 annot-version=v1.0 MASSPRLRRITGGLNLKCRGELVEGHNGGKDDGFYIRRCVEIARKAIGRTSPNPMVGCVIVKDGEIVGEGFHPKAGQPHAEVFALRDAGSLAENATAYVS LEPCNHYGRTPPCTEALINAKVKKVVVGMVDPNPIVASKGVEKLRGAGIDVTVGVEEELCWRLNESYIHKMLTGKPFVTIRYSISLNGNVMNQTGRGVTE TGGYYSRLLQEYDAVVLSASSTEHMSLPVSQEPGASQPLWIITANSPSPVHISPLDEELDSKVIVFADEESTAGPGISHKGIETVVLDQMNLDAVLEYCN QQGLCSVLLDLRGSFGIRKLVEDGMEQGSVQKIVVEVLPVWNGNSDDSDSLAALKTVSKRIELKNLQANNSSGSIVLEGYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10037850 [exp]	0	1
AT1G14310			Haloacid dehalogenase-like hyd...		Lus10036740 [exp]	2.4	0.7650
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	3.7	0.7877
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	5.7	0.7589
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	7.3	0.7428
AT1G75260			oxidoreductases, acting on NAD...		Lus10012616 [exp]	11.6	0.6897
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	11.8	0.7548
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	12.0	0.7344
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	13.1	0.7588
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	19.3	0.7405
AT3G26360			Ribosomal protein S21 family p...		Lus10006466 [exp]	20.0	0.6878

Compare expression of checked genes

Lus10037850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.