Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58760 305 / 1e-99 Integrin-linked protein kinase family (.1) AT4G18950 292 / 1e-94 Integrin-linked protein kinase family (.1) AT1G14000 283 / 4e-91 VIK VH1-interacting kinase (.1) AT3G59830 269 / 2e-85 Integrin-linked protein kinase family (.1) AT2G43850 268 / 8e-85 Integrin-linked protein kinase family (.1.2) AT2G31800 257 / 9e-81 Integrin-linked protein kinase family (.1) AT2G17700 184 / 3e-52 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT1G67890 181 / 3e-50 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 174 / 3e-49 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT4G35780 172 / 6e-48 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030387 [exp] 822 / 0 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10029277 [exp] 286 / 8e-92 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10030435 [exp] 278 / 2e-89 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 277 / 6e-89 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10008350 [exp] 253 / 5e-78 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 219 / 5e-65 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10004066 [exp] 199 / 2e-59 AT1G14000 174 / 6e-50 VH1-interacting kinase (.1) Lus10023989 [exp] 173 / 6e-48 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 173 / 7e-48 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158950 [exp] 637 / 0 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.004G064400 [exp] 294 / 2e-95 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.010G164500 [exp] 277 / 6e-89 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.008G090800 [exp] 276 / 1e-88 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.017G123100 [exp] 266 / 2e-85 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.017G007800 [exp] 262 / 1e-82 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 258 / 6e-81 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.004G179100 [exp] 173 / 7e-49 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 174 / 3e-48 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 170 / 5e-48 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037851 pacid=23163696 polypeptide=Lus10037851 locus=Lus10037851.g ID=Lus10037851.BGIv1.0 annot-version=v1.0 ATGGATGAATTTGACGAAGCTGTTTCTTCTTCGTTGAAGAAGATTAGCGGAGTTGACTCGGAAAGTCCGTACAGGCTGCTCCACTGCTCCAGTAAAGGCG ACAGAGCCGGAGTGATGCAGGAATTGAACAACGGTGTCCCGCCAAATCTTTCCGATTACGATAAGCGGACGGCTCTTCATTTGGCCTCCTCTGAAGGCCG TGCCGGAATCGTGCGTCTACTTCTTGAGAAAGGCGCTAATGTGAATTCTCTTGATCGATGGGGTCGTACTCCATTGTCTGATGCTCGGAGCTTTGGTCAT ATGGACATTTGCAAGGTACTTGAATCTGGAGGCGGCATCGATCCGGTGGGACGTGATTCCCAAACGCCATGCTATGAGATTCACTTCAGTGAAGTGGACA TGCATAATGCAACGCTCATCGGAGAATTTTTCATATTGCTTGACGATATCTTTGTTGATGAGCATGAACTTAAAATTGATCAAGTAAATCAGGGAACATA TGGGGAGGTTTACTTAGTAAAATGGCGTGGTACTGAAGTGGCTGCAAAGACCATACGCTCTTCCATTGCTTCAAATCCGAGTGTGAAGTCAACCTTTATC AAGGAATTGGGTTTGTGGCAAAAGTTGAGGCACCCAAATATAGTGCAGTTTTTGGGTGTTCTGACGCACTCTGATCGCTTGATCTTTCTGACGGAGTATC TTCGGAATGGAAGTTTGTACGACATATTGAGAAAGAAGGGAAGACTTGATCCACCGACCGCTGTTGCTTATGCTTTAGATATAGCAAGGGGTATGAATTA TCTACATCGACACAAACCACATGCCATAATACATCGAGATTTGACGCCAAGGAACGTGTTAGTAGATGAGTCGGGGCATCTCAAAGTCACGGATTTTGGC TTAAGCAAGATTGGAGAACAAAAGGATGCTTATGGGTACAAAATGACAGGAGGAACTGGCTCATATCGGTACATGGCCCCAGAGGTTTATCGCCGAGAAT CCTATGGGAAGAGTGTTGATGTATTCTCTTTTGCTCTGATCTTTCATGAGTTGTTTCTAGGAGGACCTTCGAATGCAACAGAACTTCCAGAGCAAGTTGC AGACAAACGGGCATATGAAGATGCTAGACCATCACTGTCTTCGTTTGTATACCCTGACGCAATTAAGAGGCTTCTTCGAGATTGTTGGCACAGCAACCCA GAATGTCGACCGACATTCGAAGAGATAATTGTACAGCTAGAAGTGATCCAAGACGGTTTGCGGAGACAGAGAGCTGTAGGTTCCTGTCAATGCTTCATCT TATGA
AA sequence Show only first row Show all	>Lus10037851 pacid=23163696 polypeptide=Lus10037851 locus=Lus10037851.g ID=Lus10037851.BGIv1.0 annot-version=v1.0 MDEFDEAVSSSLKKISGVDSESPYRLLHCSSKGDRAGVMQELNNGVPPNLSDYDKRTALHLASSEGRAGIVRLLLEKGANVNSLDRWGRTPLSDARSFGH MDICKVLESGGGIDPVGRDSQTPCYEIHFSEVDMHNATLIGEFFILLDDIFVDEHELKIDQVNQGTYGEVYLVKWRGTEVAAKTIRSSIASNPSVKSTFI KELGLWQKLRHPNIVQFLGVLTHSDRLIFLTEYLRNGSLYDILRKKGRLDPPTAVAYALDIARGMNYLHRHKPHAIIHRDLTPRNVLVDESGHLKVTDFG LSKIGEQKDAYGYKMTGGTGSYRYMAPEVYRRESYGKSVDVFSFALIFHELFLGGPSNATELPEQVADKRAYEDARPSLSSFVYPDAIKRLLRDCWHSNP ECRPTFEEIIVQLEVIQDGLRRQRAVGSCQCFIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58760			Integrin-linked protein kinase...		Lus10037851 [exp]	0	1
					Lus10001722 [exp]	5.0	0.8683
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	8.2	0.9100
AT5G49180			Plant invertase/pectin methyle...		Lus10023775 [exp]	13.9	0.7740
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	14.0	0.9049
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	16.1	0.9038
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	17.0	0.9048
					Lus10038266 [exp]	17.7	0.8693
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10016200 [exp]	19.9	0.8198
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	21.9	0.9035
AT3G52610			unknown protein		Lus10014215 [exp]	23.5	0.8997

Compare expression of checked genes

Lus10037851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.