Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00525 75 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030386 [exp] 256 / 7e-89 AT4G00525 98 / 1e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083100 [exp] 109 / 8e-31 AT4G00525 99 / 5e-27 unknown protein Potri.002G159100 [exp] 107 / 7e-30 AT4G00525 105 / 9e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037852 pacid=23163738 polypeptide=Lus10037852 locus=Lus10037852.g ID=Lus10037852.BGIv1.0 annot-version=v1.0 ATGGCACTGAACTGTCCGCCGGAGGGAGCCCCAAACTCCGACGCCGGCGTCAGTCATGGATCGGGAGGAGCCGAGCAGGAATTCGAAGAGGTTATGATAG AGGAAGGAGAGTTGGATGAGTTGGCGGAGGAAGTACAACAGATGGCGAAGAAGATTCAAGAGTACAGAGCTACTCTCCCCGACCAGCTCAATACGACTCT AGCTTCACTTCTCTCTTCCCAGAGGCTTCCCATGTCTGAAATCGATTTTGCCACCGAGGCCTCTGCTCCAGAGTCGAGGCAGGTTAAGTCAAGCACCGGA GCATTACAAAGCGAAGAAGAAGATCAACAAACTCGCAAGAAATTGAAGTTGTTGGAAGATAAAGTAGCTAAGAATGCTTCAGGTATGCCGATGGTTATAA AGAGGATAAAAGACTGTATCTCCAAGATTGACGCATTAGAGTCGTCTTCGAAGCCAGACATACATCCTGCTTTCAGAATGAAAAAGGGATAG
AA sequence Show only first row Show all	>Lus10037852 pacid=23163738 polypeptide=Lus10037852 locus=Lus10037852.g ID=Lus10037852.BGIv1.0 annot-version=v1.0 MALNCPPEGAPNSDAGVSHGSGGAEQEFEEVMIEEGELDELAEEVQQMAKKIQEYRATLPDQLNTTLASLLSSQRLPMSEIDFATEASAPESRQVKSSTG ALQSEEEDQQTRKKLKLLEDKVAKNASGMPMVIKRIKDCISKIDALESSSKPDIHPAFRMKKG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00525			unknown protein		Lus10037852 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	1.7	0.7677
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	7.2	0.7513
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	9.6	0.7162
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	12.4	0.7014
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	17.0	0.6832
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	18.7	0.7281
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	20.2	0.6837
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Lus10022400 [exp]	20.5	0.6579
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	25.9	0.6865
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	26.8	0.6533

Compare expression of checked genes

Lus10037852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.