Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01710 595 / 0 Acyl-CoA thioesterase family protein (.1) AT4G00520 483 / 4e-170 Acyl-CoA thioesterase family protein (.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030385 [exp] 840 / 0 AT1G01710 617 / 0.0 Acyl-CoA thioesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083300 [exp] 659 / 0 AT1G01710 557 / 0.0 Acyl-CoA thioesterase family protein (.1) Potri.002G159150 [exp] 78 / 2e-17 AT1G01710 72 / 6e-16 Acyl-CoA thioesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF02551 [flax] [poplar] Acyl_CoA_thio Acyl-CoA thioesterase CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037853 pacid=23163826 polypeptide=Lus10037853 locus=Lus10037853.g ID=Lus10037853.BGIv1.0 annot-version=v1.0 ATGGATGCGGAATCAGTTATGGAGTTCCTAGGTTGCGTGCCTTTGCTGCAGCGGTTGCCGAGTTCCTCGCTGAAGAAAATAGCTCAGCTCGTCACTGCTC GACATTTTGATAAAGGACAGTATGTGATGCGTGAGGGTGAAGTCGGTGAAGGTGTTTATTTCATATGGGAAGGGGAGGCTGAAGTGGGTGGATCAGTGCA TTCCGAGGAGGAAAATCGCCCCGAGTTTCAATTGAAACGGTTTGATTACTTTGGCAATGGTGTCTCAGTCCAGCAAGTAGATGTGATTGCTTTAACCAAT CTTACCTGCTTAGTGCTGCTCCGTGAACATTGCAGCTTACTGCAGACAAAATCGATATGGAGAGCCGATGAGACTAGTGATTCATGCTCCCTTGTGGAAC GTATACTTCAGTTAGATTCAGTAGAAGTGAATCTATTCCATGGAATAACTTTGCCAGAGGCCCCCAAGTTCGGGAAGGTTTTTGGAGGTCAGTTTGTTGG CCAGGCACTTGCTGCAGCATCAAAAACTGTGGATTGCCTAAAGATTGTACACAGTTTGCACTCTTATTTCCTTCTTGTTGGTGATTTTAACATGCCAATT CTTTACCAAGTTCACCGCATCCGTGACGGGAAAAGCTTTGCTACCCGTAGAGTTGATGCCATACAAAAGGGAAACGTTATGTTCACGTTGATTGCATCAT TTCAGAAAGAAGAAACAGGTTTCGACCACCAGGCAGTAACAATGCCATCTGTACCAGATCCGGAGATGCTCTTGTCATTGGAACAGCTGCGTGACAAGCG CTTAACAGACCCTCGTATTCCAAGAAGCTACAGAAACAAAGTAGCTGCTAAAGAATTTATCCCTTGGCCAATAGAGATTCGGTTCTGCGAGCCTAGTACC CGCACCAATCAGACAAAGTCTCCTTCAAGCTTGAAGTACTGGTTCAGAGCCAAAGGAAAGCTTTCGGATGATCAAGCTTTGCATAGATGTGTAGCAGCAT ATACTTCAGATCTCATCTTTCTTCAAGTTAGCTTGAACCCTCATCGCCATAGGGGTTTGAAGGCATCTGCTGTTAGTCTTGATCACTCGATGTGGTTCCA TCGACCTTTCAGAGCTGATGATTGGGTATTATTTGTGATCGATAGTCCGGCTGCATCCAATGCGCGCGGGTTCGTATCTGGAGCTATGTTCACTAAAAAG GGAGAGCACATCGTGTCAGTAACCCAAGAGGGTCTTCTTCGGAAGCTTAAGTTGCCGAATCAAGCCGCTGTTTCGAAGCTGTAA
AA sequence Show only first row Show all	>Lus10037853 pacid=23163826 polypeptide=Lus10037853 locus=Lus10037853.g ID=Lus10037853.BGIv1.0 annot-version=v1.0 MDAESVMEFLGCVPLLQRLPSSSLKKIAQLVTARHFDKGQYVMREGEVGEGVYFIWEGEAEVGGSVHSEEENRPEFQLKRFDYFGNGVSVQQVDVIALTN LTCLVLLREHCSLLQTKSIWRADETSDSCSLVERILQLDSVEVNLFHGITLPEAPKFGKVFGGQFVGQALAAASKTVDCLKIVHSLHSYFLLVGDFNMPI LYQVHRIRDGKSFATRRVDAIQKGNVMFTLIASFQKEETGFDHQAVTMPSVPDPEMLLSLEQLRDKRLTDPRIPRSYRNKVAAKEFIPWPIEIRFCEPST RTNQTKSPSSLKYWFRAKGKLSDDQALHRCVAAYTSDLIFLQVSLNPHRHRGLKASAVSLDHSMWFHRPFRADDWVLFVIDSPAASNARGFVSGAMFTKK GEHIVSVTQEGLLRKLKLPNQAAVSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	2.0	0.8700
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	2.4	0.8542
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10004832 [exp]	3.5	0.8213
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	3.9	0.8359
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	4.5	0.8346
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10010585 [exp]	5.2	0.8171
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	6.6	0.8159
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	11.0	0.8167
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	11.0	0.8197
AT1G55535			unknown protein		Lus10021858 [exp]	12.0	0.8147

Compare expression of checked genes

Lus10037853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.