Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00710 764 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G63500 724 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 717 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 702 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 682 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 654 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 591 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G46570 578 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 554 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 547 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030383 [exp] 1003 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10018849 [exp] 784 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1) Lus10008530 [exp] 740 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 740 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 731 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10027743 [exp] 714 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 706 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10000806 [exp] 688 / 0 AT4G00710 625 / 0.0 BR-signaling kinase 3 (.1) Lus10040719 [exp] 673 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082400 [exp] 834 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 831 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.003G126700 [exp] 743 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G104700 [exp] 738 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.006G093900 [exp] 712 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 699 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 686 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 683 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G142800 [exp] 594 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 592 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037856 pacid=23163739 polypeptide=Lus10037856 locus=Lus10037856.g ID=Lus10037856.BGIv1.0 annot-version=v1.0 ATGGGTGGTCAGTGTTCCACGCTTCTGTGTTGCAGTGATTCACAGTTCAAAGCAGCAGCGGTTGTTGAAGCTGCTAATTCCGGGGACTTGGTGGAGGAGA ATGGAGTTGACTACTTGTCTGCGTTGAAGGAGTTCACGTTCGAGCAACTGAAGAACGCCACCTCTGGTTTTGCAGTGGAGAATATTGTGTCTGAACATGG AGAGAAAGCTCCTAACGTTGTTTACAAAGGGAAGCTTGAAAACCAGTCCAAAATTGCTGTCAAGCGCTTCAATCGAATGGCTTGGCCTGATGCTCGCCAG TTTGTGGAGGAAGCAAGATCCGTTGGCCAGCTCCGTAGCCATAGACTGTCCAATTTGGTTGGTTATTGCTGTGAAGGTGACGAAAGGCTACTTGTTGCAG AATTTATGCCTAATGAGACACTAGCAAAGCATCTGTTCCATTGGGAAGCACAGCCTATGAAGTGGGGTATGAGATTAAGGGTTGTTCTGCACCTAGCAGA AGCTCTAGAGTATTGCATTAGCAAAGGACGTACACTGTATCATGATCTTAATGCTTATAGAATTTTGTTTGATGAGGATGCTAATCCAAGACTGTCAACA TTTGGGTTGATGAAGAACAGCAGGGATGGGAAAAGTTACAGTACCAACCTGGCATTTACTCCACCTGAGTATCTGAGAACTGGAAGGATAATGCCAGAGA GTGTGATATATAGCTTTGGCACCCTTTTGCTTGATCTTCTCAGCGGGAAGCATATCCCGCCAAGCCATGCTCTCGACTTGATACGCGACAGGAATCTTCA AATGTTGACTGATTCTTGCTTGGAAGGGCAGTTCTCCAATGATGACGGCACAGAGTTACTGCGGTTGGCTTCAAGATGTTTACAGTCTGAACTCCGAGAA CGACCCAGTCTAAAAGTTTTAATGGCTGCTTTGACGCCTCTTCAGAAAGCAGCAGATGTTCCTTCCCATGTATTGATGGGTATGCCAAGCAGTGAATCAG ATTATCCTTTGTCTTCATTTGGCGATGCGTGCTCCGCAAAGGATCTAACATCTATACACGAGATCTTAGATAACCTCGGTTATAAAGACGACGAAGGAGT GGCTAACGAGCTCTCTTTCCAGCTATGGACTGACGAAATGCTAGAAACTCTAAACACAAAGAAGCAGGGAGATGCTGCATTTAAGCAGAAGGATTTTAAG GAAGCAATAGACTTTTATACACAGTTCATAGATGCTGGAACCATGGCTTCCCCGACAGTTCATGCGCGGCGTAGTCTGTCATATCTCATGACCGATAGGC CCCAAGAAGCTCTGAGCGACGCGATGCAGGCGCAAGTCATTTCCCCTGTATGGCACGTTGCTTCGTACCTTGAAGGTGTGGCTCTTTCGGCGCTTGGAAG AGAGAATGAAGCGCAGATGGCACTGAAAGAAGGCACGAGTCTTGAAGCTGAAAGAGTTGAAAATGCTGAAGAGAAGTGA
AA sequence Show only first row Show all	>Lus10037856 pacid=23163739 polypeptide=Lus10037856 locus=Lus10037856.g ID=Lus10037856.BGIv1.0 annot-version=v1.0 MGGQCSTLLCCSDSQFKAAAVVEAANSGDLVEENGVDYLSALKEFTFEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQSKIAVKRFNRMAWPDARQ FVEEARSVGQLRSHRLSNLVGYCCEGDERLLVAEFMPNETLAKHLFHWEAQPMKWGMRLRVVLHLAEALEYCISKGRTLYHDLNAYRILFDEDANPRLST FGLMKNSRDGKSYSTNLAFTPPEYLRTGRIMPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSNDDGTELLRLASRCLQSELRE RPSLKVLMAALTPLQKAADVPSHVLMGMPSSESDYPLSSFGDACSAKDLTSIHEILDNLGYKDDEGVANELSFQLWTDEMLETLNTKKQGDAAFKQKDFK EAIDFYTQFIDAGTMASPTVHARRSLSYLMTDRPQEALSDAMQAQVISPVWHVASYLEGVALSALGRENEAQMALKEGTSLEAERVENAEEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10037856 [exp]	0	1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	3.2	0.9351
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	6.6	0.9376
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10004270 [exp]	11.8	0.9098
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	18.6	0.9348
AT1G58030		CAT2	cationic amino acid transporte...		Lus10013638 [exp]	22.7	0.9223
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	25.1	0.9245
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	31.0	0.9239
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	32.2	0.9126
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10001328 [exp]	32.3	0.8753
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	33.6	0.9175

Compare expression of checked genes

Lus10037856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.