Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45850 195 / 2e-59 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 184 / 2e-55 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 164 / 3e-47 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT2G33620 163 / 3e-47 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G00200 150 / 2e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 150 / 4e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 146 / 5e-41 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 144 / 1e-39 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 143 / 9e-39 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 141 / 2e-38 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030381 [exp] 410 / 2e-143 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10004022 [exp] 168 / 5e-49 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 168 / 6e-49 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10008533 [exp] 161 / 2e-46 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 160 / 9e-46 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10008535 [exp] 159 / 2e-45 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1) Lus10000315 [exp] 159 / 4e-45 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10015027 [exp] 157 / 7e-45 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10004318 [exp] 156 / 2e-44 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082100 [exp] 262 / 1e-85 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 254 / 2e-82 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.003G126500 [exp] 184 / 4e-55 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.001G104900 [exp] 176 / 2e-52 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.014G070000 [exp] 174 / 1e-51 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 172 / 7e-51 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G090900 [exp] 171 / 6e-50 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 168 / 9e-49 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G115800 [exp] 166 / 9e-49 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G143500 [exp] 167 / 1e-48 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10037858 pacid=23163871 polypeptide=Lus10037858 locus=Lus10037858.g ID=Lus10037858.BGIv1.0 annot-version=v1.0 ATGGATCGATCTGGATCATTCTACACGCAGAGAGGGATTTCAACAGGTGGTTTGAACATGTCTTCTTCTTCTTCACCAATGGGGGCGGTACAGCAGTTCC AATCAAACATGGTGGTTGGATCTTCATCAGCCGCATTGCCTATGGAGCCGCAGCTTCCTCCCCAACAGCAGCAGCTGGTTGCTGAGGCGGCGGGAGTGAG TGTGATGAAGAGGAAAAGAGGGAGGCCGAGGAAGTATGGACCAGATGGGACAGCTTCATTGGCATTGTCTCCTTCTTCAATCTCTTCTTCCTCCACTCAT CCTGGCACCATTACTCCTACCACTACTCAGAAACGTGGCAGAGGCCGCCCACCTGGCAGTGGCAAGAAGCAGCAGCAGCTCCTCATGGCTTCTTCCTCTT CTCCTCTTGGCATAGGAGACTGGATATCAGGCTCAGCTGGGATTGGTTTCACTCCTCATATCATCACTGTTGCAGTTGGGGAAGACATTGCGACAAAGAT CATGTCCTTCTCGCAGCAAGGGCCGCGAGCTATCTGTATATTATCAGCAAATGGAGCAGTCTCTACTGTAACTCTTACTCAACCTTCTACATCTGGAGGC ACTGTCACATACGAGGGCCGGTTCGAGATATTGTGCCTCTCGGGCTCTTACTTGCTGACTGAGGTTACTAGCTCGCGCAATAGAGCCGGTAGCCTGAGTG TCTCGCTTGCCAGTCCTGATGGTCGCGTCTTTGGAGGCGGAGTTGGAGGGATGCTCATTGCAGCTAGCCCTGTTCAGGTGATCGTGGGGAGCTTTATATG GGGCGGTCCAAAGACGAAGAGCAAGAAAGCGGAAAGGTCAGAAGGCGGTAGAGAATCCGAGCAGCAGCAGCACCACCTGCAGACGACTCATCACGATAAT CCGGTGAGTCCAACGAGCGGTGTTCCTCCTCATCCCCCTCCTCAGGCTAGTCAGAGCCTTGCACCAGAAGGCGGTGCAGGAATCTGGCCTGGTTCGCGGC CACTGGACATGCACCACAGCCACCACCATGACATTGATTTGATGCGCGGTTAG
AA sequence Show only first row Show all	>Lus10037858 pacid=23163871 polypeptide=Lus10037858 locus=Lus10037858.g ID=Lus10037858.BGIv1.0 annot-version=v1.0 MDRSGSFYTQRGISTGGLNMSSSSSPMGAVQQFQSNMVVGSSSAALPMEPQLPPQQQQLVAEAAGVSVMKRKRGRPRKYGPDGTASLALSPSSISSSSTH PGTITPTTTQKRGRGRPPGSGKKQQQLLMASSSSPLGIGDWISGSAGIGFTPHIITVAVGEDIATKIMSFSQQGPRAICILSANGAVSTVTLTQPSTSGG TVTYEGRFEILCLSGSYLLTEVTSSRNRAGSLSVSLASPDGRVFGGGVGGMLIAASPVQVIVGSFIWGGPKTKSKKAERSEGGRESEQQQHHLQTTHHDN PVSPTSGVPPHPPPQASQSLAPEGGAGIWPGSRPLDMHHSHHHDIDLMRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	0	1
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	1.0	0.9288
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	1.7	0.9073
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	3.2	0.9130
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	5.5	0.8705
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	6.0	0.8649
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	6.9	0.8657
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	7.1	0.8155
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	9.8	0.8493
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	10.2	0.8605
AT1G53800			unknown protein		Lus10037460 [exp]	11.2	0.8257

Compare expression of checked genes

Lus10037858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.