Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62040 183 / 7e-58 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G59480 138 / 7e-40 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 130 / 8e-37 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G02230 127 / 9e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G32150 121 / 2e-33 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038016 [exp] 213 / 2e-68 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009256 [exp] 209 / 8e-68 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10024382 [exp] 139 / 4e-40 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004914 [exp] 138 / 5e-40 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010537 [exp] 137 / 8e-40 AT2G32150 338 / 7e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010848 [exp] 136 / 1e-38 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 130 / 2e-36 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 129 / 2e-36 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 128 / 4e-36 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185300 [exp] 167 / 4e-51 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G110800 [exp] 167 / 4e-51 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.009G033500 [exp] 150 / 9e-44 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.006G086900 [exp] 144 / 6e-42 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.010G089300 [exp] 139 / 2e-40 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G242300 [exp] 133 / 6e-38 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.008G151700 [exp] 129 / 2e-36 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037859 pacid=23163843 polypeptide=Lus10037859 locus=Lus10037859.g ID=Lus10037859.BGIv1.0 annot-version=v1.0 ATGTTGGCTGCTTGCTGTTTGACTTGGACGATACTCTTTACCCATCGAGCACTGGTGTCAGCTTGGCCTGCTGTAGAAACATCCAAGGCTATGGGATATG AATTTGACATCGATGAGTTCCATGCTTGTGTTCATGGAACTCTGCCTTACAACAAACTGAAGGCTGATCCTGTGTTGAGGAAACTCCTGCTCTCCATGCC CCATAAGAAATATATCTTCACCAATGCTGATCAGGCTCATGTTGATGAGGCTATCAAGAGATTAGGACTGGAAGACTGTTTTCAAGGCATCATTTGCTTA GAAACCCTTAACCCTCCCGCAGCTGCTGCCACCGCTGCATCAATCCTCTGCAAGGCATCTGTGGAAGCCTTTGAAGCTGCCATCAGGATTGCAGATGTCC ATCCTAGCAAAACAATCCTCATTGATGACAGTACGAGCAACATTGCTAGTGGGAAACTTGCTGGACTTGATACCGTTATAGTAAGCAAAGCATTATCATA TTATTCGTCTTCCTTTAATGACAGTACAAGAGACAATGTGCCGGGGGAACTAAACAAATTGCATACCATACCATTCATTATATATAGAGAGAATGAATGC GTTATTAGGAGTGATTTAAAACCATTAGCTACATCTGCTTTAAGGCCCTCTGAGCTGTGA
AA sequence Show only first row Show all	>Lus10037859 pacid=23163843 polypeptide=Lus10037859 locus=Lus10037859.g ID=Lus10037859.BGIv1.0 annot-version=v1.0 MLAACCLTWTILFTHRALVSAWPAVETSKAMGYEFDIDEFHACVHGTLPYNKLKADPVLRKLLLSMPHKKYIFTNADQAHVDEAIKRLGLEDCFQGIICL ETLNPPAAAATAASILCKASVEAFEAAIRIADVHPSKTILIDDSTSNIASGKLAGLDTVIVSKALSYYSSSFNDSTRDNVPGELNKLHTIPFIIYRENEC VIRSDLKPLATSALRPSEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10037859 [exp]	0	1
					Lus10009393 [exp]	10.0	0.9067
AT1G34580			Major facilitator superfamily ...		Lus10020934 [exp]	11.1	0.7740
					Lus10001872 [exp]	14.4	0.9062
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10021400 [exp]	15.0	0.6274
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	17.7	0.9010
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	20.1	0.8974
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	22.6	0.8944
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	24.7	0.8944
					Lus10011425 [exp]	26.7	0.8944
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	28.6	0.8944

Compare expression of checked genes

Lus10037859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.