Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030380 [exp] 169 / 1e-54 ND / Lus10037861 [exp] 154 / 1e-48 ND / Lus10014735 [exp] 121 / 1e-35 ND / Lus10002730 [exp] 120 / 2e-35 ND / Lus10014737 [exp] 118 / 1e-34 ND / Lus10028948 [exp] 116 / 1e-33 ND / Lus10002152 [exp] 115 / 3e-33 ND / Lus10007472 [exp] 108 / 8e-31 ND 38 / 0.002 Lus10037860 [exp] 102 / 8e-28 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158700 [exp] 102 / 5e-28 ND / Potri.014G082700 [exp] 98 / 3e-26 ND / Potri.014G081800 [exp] 97 / 9e-26 ND / Potri.017G153100 [exp] 97 / 9e-26 ND / Potri.002G158600 [exp] 96 / 2e-25 ND / Potri.003G126200 [exp] 96 / 3e-25 ND / Potri.009G009700 [exp] 95 / 4e-25 ND / Potri.014G081900 [exp] 93 / 3e-24 ND / Potri.014G082000 [exp] 88 / 2e-22 ND / Potri.019G100100 [exp] 87 / 4e-22 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037862 pacid=23163740 polypeptide=Lus10037862 locus=Lus10037862.g ID=Lus10037862.BGIv1.0 annot-version=v1.0 ATGAAGATCAACATGATTAACCTCATCATAACTCTCCTATTCCTCCTCCTTCTCATCAAGCCCTCCAAACAAACCTTATCCAATCCCAACAACATCACCG CTAGTATCGAGGGAACTGACCAAACCAGAGCCATTCTGACCCTCAACGGCTTTCAAAAGGGCGAAAGCGGCGGCCAGCCATCAGAGTGCGACGGGAACTA CCACGACGACAACGAGAACATTGTGGCACTCTCGACGCAATGGTACGACCATGGGAAGATGTGCTTTAAGTGCATCACGACCACTAGGGATGACGGCGGC CGAGGTAGTACCACGATGGCGAAGGTGGTCGACGAATGTGACGTGTCCGGTGGTTGTCGGAAAAATGTTGTGGATGGGTCCAAGGCAGTTTGGAAGGCCC TTGGCGTGGATGAAAAGGATCCTAGTTATGGTGGAATCCCGGTTACGTGGGGGATGTGCTAG
AA sequence Show only first row Show all	>Lus10037862 pacid=23163740 polypeptide=Lus10037862 locus=Lus10037862.g ID=Lus10037862.BGIv1.0 annot-version=v1.0 MKINMINLIITLLFLLLLIKPSKQTLSNPNNITASIEGTDQTRAILTLNGFQKGESGGQPSECDGNYHDDNENIVALSTQWYDHGKMCFKCITTTRDDGG RGSTTMAKVVDECDVSGGCRKNVVDGSKAVWKALGVDEKDPSYGGIPVTWGMC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037862 [exp]	0	1
AT5G57750			RING/U-box superfamily protein...		Lus10016541 [exp]	2.0	0.7466
					Lus10024992 [exp]	5.1	0.8814
AT1G09290			unknown protein		Lus10012754 [exp]	7.9	0.8573
AT3G52470			Late embryogenesis abundant (L...		Lus10000157 [exp]	9.8	0.7652
AT5G16910		ATCSLD2	cellulose-synthase like D2 (.1...		Lus10012119 [exp]	12.2	0.6376
					Lus10003695 [exp]	13.4	0.7071
					Lus10003774 [exp]	14.7	0.7071
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	15.9	0.7071
					Lus10033071 [exp]	17.0	0.7071
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	18.0	0.7071

Compare expression of checked genes

Lus10037862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.