Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23850 436 / 1e-148 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 429 / 4e-146 DTA2 downstream target of AGL15 2 (.1.2) AT3G48980 425 / 2e-144 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 421 / 1e-142 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT3G61270 414 / 1e-140 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45840 407 / 2e-137 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61290 404 / 5e-137 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 395 / 4e-132 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 343 / 9e-113 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039228 [exp] 425 / 2e-144 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 405 / 3e-137 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10024519 [exp] 384 / 3e-128 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 368 / 3e-123 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 343 / 5e-113 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 318 / 4e-103 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 311 / 4e-100 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 256 / 2e-77 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 226 / 2e-69 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157900 [exp] 483 / 5e-168 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 462 / 1e-159 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.015G144400 [exp] 444 / 4e-152 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 442 / 4e-151 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.003G125000 [exp] 436 / 4e-149 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 320 / 1e-103 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 74 / 5e-16 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10037863 pacid=23163860 polypeptide=Lus10037863 locus=Lus10037863.g ID=Lus10037863.BGIv1.0 annot-version=v1.0 ATGAGCTTTACTATCTCGTCGGCGGCGACGGCTTCACGACTATGGCCGACGATTGGTAGATTGGTATCAGGAACCATACTTGTCGTCATCTTCGTCCTCT CTCTGATGTTTGGCTCTCTTCATCTACGGAATTACAATTCTCACATTAAAAATTTGTGTGAACTAAAAATCGACGGTGACACCTTTAATGTAAGCTTCAA TGATGCAACTCAAACTTTGCACTCATTCCAGATCGGAACGCTCGGAATAAACATCGCCGGCGAGGGAAAATCTCACTCCGACAAGATCTCAACAAGCTAC CAAAATTACAAATATCCACTCATCAACTGCTCATCTATCAACATTACCACCTCAGCAAGTGGTTCCCACCTTGAATCCGGGCCCCACCATACTCCGAGCC AGTTATCGCCTACGACATGCCCAGACTACTTCCAATGGATCCGAGAAGATCTACGGCCATGGAAGAGCCACGGAATCAGTAGAGAAGCCGTGGAGGGAGC TAAGCCGTTGGCACACTTCAGGCTGGTGATAGTCGACGGCAAGGCGTACTTGGAGAGGTTCAACAATGCTTTCCAGACCCGAGACGTCTTCACCCTGTGG GGGATCTTGCAGCTTTTGAGGCTGTACCCGGGTCGGGTTCCGGATCTCGAACTCATGTTCCGGTGCGAAGACCGACCCGCCATCCACAAGAGGGAGCTTA CGAGGAGGAATTCGTCGTCGCCGCCGGTGCTTTTCCATTACTGTGGAGATGAGGACGCTTTGGGAGTTGTCTTCCCTGACTGGACCTTCTGGGGTTGGGG AGAGACGAATATAAAGCCATGGAAGAGTGTAGTAAGAGACATAAATGAAATGAGTAAGAAGATCAAGTGGGAAGATAGAGTACCCTATGCTTATTGGAGG GGAAACCCTAATAAATGGGGAGAAGAAGAACAGAACGGTTTCGTTAACTCGAAATTAGAGGATCAATGCAAACATAGGTACAAAATTTACATTGAAGGTT ACGGATGGTCGGTGAGTGAGAAGTACATAATGGCTTGTGACTCGATGACTCTTTCGGTGAAGCCTCAGTTTCATGACTTCTTCACAAGAAGCTTGATGCC GCTGCGTCACTACTGGCCCATCAGACCGGAGTATAAGTGTCGAGACATCAAGTTCGCAGTCGAGTGGGGCAACAGCAACCCCCATAAGGCACAGGCAATC GGGAAGGTGGGGAGTAGATTCATGAAGAAGGATCTAAAGATGAAGAACGTGTACGATTACATGCTTCATACACTGACCCAATACGCCAAGCTGCTCAGAT TCAAGCCAAGGCTACCCGAAGGGTTTTTAGTAGGTGACGAGTTGCGAAGCGAGACGATGGCTTGCTCTTGGGAAGGCGTATGGAGACAGTTTATGTTGGA TTCGACAGTCAAATTTTCTAGCGGTCAACTTCCTTGTTCGATGCCAGCTTACGATGGCACCGAACAAGAAATTTCCAAGAGAAGAAGAGAAATTGAGAGG AGAGTAGAGAAGTTGGAGGATGAATACTATAACTTGGGCAACAGTTTATAA
AA sequence Show only first row Show all	>Lus10037863 pacid=23163860 polypeptide=Lus10037863 locus=Lus10037863.g ID=Lus10037863.BGIv1.0 annot-version=v1.0 MSFTISSAATASRLWPTIGRLVSGTILVVIFVLSLMFGSLHLRNYNSHIKNLCELKIDGDTFNVSFNDATQTLHSFQIGTLGINIAGEGKSHSDKISTSY QNYKYPLINCSSINITTSASGSHLESGPHHTPSQLSPTTCPDYFQWIREDLRPWKSHGISREAVEGAKPLAHFRLVIVDGKAYLERFNNAFQTRDVFTLW GILQLLRLYPGRVPDLELMFRCEDRPAIHKRELTRRNSSSPPVLFHYCGDEDALGVVFPDWTFWGWGETNIKPWKSVVRDINEMSKKIKWEDRVPYAYWR GNPNKWGEEEQNGFVNSKLEDQCKHRYKIYIEGYGWSVSEKYIMACDSMTLSVKPQFHDFFTRSLMPLRHYWPIRPEYKCRDIKFAVEWGNSNPHKAQAI GKVGSRFMKKDLKMKNVYDYMLHTLTQYAKLLRFKPRLPEGFLVGDELRSETMACSWEGVWRQFMLDSTVKFSSGQLPCSMPAYDGTEQEISKRRREIER RVEKLEDEYYNLGNSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	0	1
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	2.4	0.8004
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	2.4	0.8591
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	4.6	0.8129
					Lus10007992 [exp]	5.3	0.8174
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	5.3	0.8105
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	6.3	0.7950
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	7.1	0.7421
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	7.7	0.8093
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	9.9	0.7817
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	11.5	0.7492

Compare expression of checked genes

Lus10037863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.